Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq22996 255 7e-63 seq10187 221 1e-52 seq3843 170 2e-37 seq20536 125 8e-24 >seq22996 Length=989293 Score = 255 bits (282), Expect = 7e-63 Identities = 614/921 (67%), Gaps = 11/921 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||| ||| |||| ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 690974 TTACGTCTCAGATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 691033 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| ||| || || ||||| || | || || | |||||| Sbjct 691034 TTATTGGCAAACAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAA 691090 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||||||||| ||| ||| || || || | || || | | ||| Sbjct 691091 ATGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCACCCTTGGAAACA 691150 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | || || |||||||| || ||| Sbjct 691151 TCACCCTCAAAGTACTGCCACTTGACAAACCTGGCAATCGCGTGCATGTCAGACAAATCG 691210 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | ||||| | |||||||| Sbjct 691211 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTAGCCCA 691269 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || ||||| || || | | ||||||||| |||| || ||| Sbjct 691270 GAGATACTCATCAGGGCTATATGTGTCTTGTGCCCACTCCATAAACTTTTGGATTTTTTC 691329 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || | || || ||| | || | |||||| || || |||||||| Sbjct 691330 ATTCTGTAGTACATACGCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 691389 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | |||| | | ||||| || ||||| | || ||||| | | |||| | Sbjct 691390 AAGGGGTGTTTCCAGCGGAGGAAGCACTTTGACAGTCCCTGTGTTTGTCAACTTTCCATT 691449 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | |||| | | | ||| ||||||| | ||| ||| | | || || || Sbjct 691450 AATGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTC 691509 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 || |||| ||| ||| ||| |||| | || || ||||| ||||| |||| Sbjct 691510 CAGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAAT 691569 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || | || || ||||| || | || ||||| || | | | | |||| || Sbjct 691570 AGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCCTTCATTGCGTAGAG 691629 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 |||| | ||||| || || ||||| || || |||||||| || || || || ||||| Sbjct 691630 GTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTC 691689 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 ||| | |||| ||||||||||| |||||| ||| | || |||||||| | ||| | Sbjct 691690 CAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTG-CAGCTA 691748 Query 162846 GAACATCGGGTCC---GCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 || | | ||| | ||| | || || || | ||| || | ||||||||| || Sbjct 691749 -AATA-GGAATCCTTGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 691806 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||||| || || | ||| || ||||| ||||| ||||| |||||||| || Sbjct 691807 GATGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGGTGAACCACTATAGAATATGC 691866 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 691867 TATTGGAAACTCTGCCTCTTC 691887 >seq10187 Length=3503860 Score = 221 bits (244), Expect = 1e-52 Identities = 605/920 (66%), Gaps = 10/920 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||||| |||| ||| || | ||| |||| || || | ||| ||| | || ||| Sbjct 1773951 TTATGTCTCAGATGCTCATCCAAACAATGGATGGCAAAGAGGTCAACATCCACGTCAAAC 1773892 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || ||| ||| ||| || || ||||| || | || || | |||||| Sbjct 1773891 TTATTGGCAAACGAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCGCCAGCTCCGAAA 1773835 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || ||||||||||| ||| ||| || || || | || | | | ||| Sbjct 1773834 ATGCACACCGAGCGCACGTGCACCCCGTCGCAGGGTGGGTAGGGAGCATCCTTGGAGACA 1773775 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| |||| |||||||| || ||||| | | ||| |||||||| || ||| Sbjct 1773774 TCACCCTCCAAGTACTGCCACTTGACAAACCTGGCAACAGCGTGCATGTCAGATAAATCG 1773715 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | || || || | || | ||||| | | |||||| Sbjct 1773714 TACTTATGG-CTGGCAGAGAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGCAGCCCA 1773656 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || ||||| || || | || ||||||||| |||| | || ||| Sbjct 1773655 GAGATACTCATCAGGGCTATATGTGTCTTGCGCCCACTCCATAAACTTCTGGATTTTTTC 1773596 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 ||| | ||| | | || || || |||| | |||||| || || | |||||| Sbjct 1773595 ATCCTGTAGTACACACCCCACATACTCTCTACTCACCACAAAGTAGGCACTGCTAGAAAA 1773536 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | |||| | | ||||| || |||| | || ||||| | | |||| Sbjct 1773535 AAGGGGTGTTTCCAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCACT 1773476 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGTGTTCGGTCTC 162605 | |||| | | | ||| ||||||| | ||| ||| | | || || || Sbjct 1773475 AATGACCTCATACCGCTTTTTCCACCTTTCTTCTTTATTGGATGGCATCCTCTCCGTTTC 1773416 Query 162606 TAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAAG 162665 | | |||| ||| ||| ||| |||| | || || ||||| ||||| |||| Sbjct 1773415 TGGGTTGTTTTCTCCCATCAACAACTTGAGCTTCCTAACAATTTCTAGGTTGGTTTTAAT 1773356 Query 162666 GGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACAG 162725 ||||| || | ||||| |||||| || || ||||| || | || | | || || Sbjct 1773355 AGGAAAATCCATACCGCAAAGATTATCAAG-TACTTCCAGTTTGCCCTCGTTGCATAGAG 1773297 Query 162726 ATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTC 162785 |||| | ||||| || || ||||| || || |||||||| || || || || ||||| Sbjct 1773296 GTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTC 1773237 Query 162786 CAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGA 162845 ||| | |||| ||||||||||| |||||| ||| | || |||||||| || | | Sbjct 1773236 CAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCAATGCCCATCACTGCAGCTAA 1773177 Query 162846 GAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAG 162903 | ||| || | ||| | || || || | ||| || | ||||||||| ||| Sbjct 1773176 ATAGGAATCC--TCGGATTTTTTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAG 1773119 Query 162904 ATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCT 162963 ||||||||||||| || || | ||| || ||||| || || ||||| ||||||| ||| Sbjct 1773118 ATGGCCCTCAGTAGCCTGTCAAGCATTTCGATCTTGTGATGAACCACTGTAGAATATGCT 1773059 Query 162964 ATGGGGAACTCAGCCTCCTC 162983 || || ||||| ||||| || Sbjct 1773058 ATTGGAAACTCTGCCTCTTC 1773039 >seq3843 Length=8268663 Score = 170 bits (188), Expect = 2e-37 Identities = 231/322 (72%), Gaps = 0/322 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || |||| | || || | || || | ||||| ||||| || || Sbjct 8031757 CATAGAGGGTGAGGCAGGCTGTTCCTGAGAACTTCCCATAACCAAAGGTATTGAAGTGAC 8031816 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||||| ||||| || || | || || ||| || Sbjct 8031817 ACATGTAACACCCTTCATCCTCCAGGGTGGTATTCCAGAAGGTGATGGTTGAGTTTTGGA 8031876 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||||| | |||||| || | ||||||||| || || || | Sbjct 8031877 GTCCCAGCTGGGTAATGTTCAACTTGTCCTTATAGGCAGGCTGGACCACCACCCCATAGC 8031936 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 | | |||| | ||||| | |||||| ||||| | || || | |||||||| || || | Sbjct 8031937 TGTTGCTGTAAGTGGCTACGTTTTCTGGGCTTGCAGGTTTCTTTTTCTGCCATGTCACAA 8031996 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | ||||| |||||||||||||| |||||||| || | || | Sbjct 8031997 TCAGGACTTCGTAGGTAGTTTGCAGAGAGCATCTTAAGGAAGCAGGCGTATACAGCTGCT 8032056 Query 172071 CCCTTTCGTCTTGCGTTACCAC 172092 | ||||| || || || ||||| Sbjct 8032057 CTCTTTCATCCTGGGTCACCAC 8032078 Score = 141 bits (156), Expect = 1e-28 Identities = 166/221 (75%), Gaps = 5/221 (2%) Strand=Plus/Plus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 |||||| | | ||| || |||||||||| || | || | ||| |||||||||| | Sbjct 8028897 GTTTGTTTAAAGTCGGTCACAGTCCCCAGATGCAGCACCTGGCAGATCACCTCCT---TC 8028953 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| ||||||| ||||| | || || |||||||||||||| || ||||| || Sbjct 8028954 CCCACCTGATTTTTAGGGTCTTTGATCTGGAGGATGCTAGTAACAGACGTGGTCCCATTT 8029013 Query 171626 CGATGTAGA-ACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| || || || ||||||||||| || || || | | ||| ||||| || || Sbjct 8029014 GGGTG-AGACACAGTCTTTGTACTATTTTCAATCCCTGACCGAGGAACCTTCCAGAAGAT 8029072 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | |||||||| | ||||| ||||||||||| || |||| Sbjct 8029073 CATGGGAGCTGGACGGGCAGTGGCAGAGCAAGTGATATTTA 8029113 >seq20536 Length=13018661 Score = 125 bits (138), Expect = 8e-24 Identities = 396/605 (65%), Gaps = 13/605 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 3773900 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 3773959 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 3773960 CTAGCTCGCTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 3774019 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| || || || | ||||| | || |||| || || Sbjct 3774020 TCTCATAGTTTTCCCTAGATGGCCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 3774079 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 3774080 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 3774139 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 3774140 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 3774197 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || || ||| || ||||| ||| || || || || | | Sbjct 3774198 CCCATAAGTATGGATTTCAATACTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 3774256 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 3774257 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 3774311 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 3774312 TTCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 3774371 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACCTTGTTTGAAGGGGCT 177421 |||||| | ||| || | || || || || | || || || || || ||| | Sbjct 3774372 GTCGCGGCGGTAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTCTGGGGAGT 3774431 Query 177422 GTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCGT 177481 | | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 3774432 ATGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCTG 3774491 Query 177482 AGGTA 177486 ||||| Sbjct 3774492 AGGTA 3774496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578222882371200