Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq13033 120 2e-22 seq21427 113 3e-20 seq7161 111 1e-19 seq24529 98.7 7e-16 seq16235 95.1 8e-15 seq6752 93.3 3e-14 seq11150 91.5 1e-13 seq19391 86.0 4e-12 seq16305 86.0 4e-12 >seq13033 Length=3880709 Score = 120 bits (132), Expect = 2e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 3665183 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 3665242 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || ||||| |||| ||||||||| || | || Sbjct 3665243 AGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGG 3665302 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 3665303 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 3665361 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 3665362 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq21427 Length=8993756 Score = 113 bits (124), Expect = 3e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| |||||| || |||||||| || ||||| ||||| | | || Sbjct 3259641 CACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCACCCTC 3259700 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || |||||||||||||| |||| || || ||| || || | ||| || || || Sbjct 3259701 CATCTGTTTTCCGGCAAAGATCAGACACTACTGGTCAGATGGGATACCCTCCTTCTCTTG 3259760 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| | || |||| || | |||||| || ||||| || |||| ||||| || | Sbjct 3259761 AATTTT-GGCTTTGACATTCTCAATGGTGTCACTGGATTCTACCTCAAGGGTGATGGTCT 3259819 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | ||||| | || || |||||||||||||| Sbjct 3259820 TGCCTGTGAGTGTCTTCACAAAGATCTGCAT 3259850 Score = 89.7 bits (98), Expect = 3e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| |||||| || |||||||| || ||||| ||||| | | || Sbjct 3259156 CACCAGGTGCAGGGTGAACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCACCCTC 3259215 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || |||||||||||||| |||| || || || || | || | ||| || ||||| Sbjct 3259216 CATCTGTTTTCCGGCAAAGATCAGACACTACTTGTCAGGTGGGATACCCTCCTTGTCTTG 3259275 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | || |||| || | |||||| || ||||| || |||| ||||| || Sbjct 3259276 AATTTT-GGCTTTGACATTCTCAATGGTGTCACTGGATTCTACCTCAAGGGTGATGGT 3259332 >seq7161 Length=8644359 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | || | ||||| || || ||| |||||| || |||||||| || ||| Sbjct 6018498 CCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 6018557 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||| | | || |||| ||||| | |||||| |||| ||||||||| || | || Sbjct 6018558 AGCGTGTGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTGGG 6018617 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 6018618 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 6018676 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 6018677 CTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 6018724 >seq24529 Length=32172056 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| |||||| || |||||||| || ||||| ||||| || || Sbjct 9537370 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCTATCCTC 9537429 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| |||||||| |||| | ||||||| || | | | ||| || || || Sbjct 9537430 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTTGGATACCCTCCTTCTCTTG 9537489 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| ||| | ||| ||| |||||| || | || || |||| ||||| || | Sbjct 9537490 AATTTTGGCTTTGA-CATTCTCAGTGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCT 9537548 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | | ||||| |||||||||||||| Sbjct 9537549 TGCCCATGAGGGTTTTCACAAAGATCTGCAT 9537579 >seq16235 Length=7452127 Score = 95.1 bits (104), Expect = 8e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| || ||| |||||| || |||||| | || ||||| || | | || || Sbjct 4796021 CACCAGATGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGACTGTGGCCATCCTC 4796080 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| |||||||| |||| | ||||||| || || | |||||| ||||| Sbjct 4796081 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGTCTTG 4796140 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 |||||| ||| | | | | |||||| || | || || |||| ||||| || || Sbjct 4796141 AATTTTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCTT 4796200 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | | || |||||||||||||||| Sbjct 4796201 GTCTTTGAGGGTCCTTACAAAGATCTGCAT 4796230 >seq6752 Length=2939 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | ||| | || | || |||||| ||| || || |||||||| || || Sbjct 2665 CCACCTCTGAGACGGAGGACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAT 2724 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | ||||| | || |||| || ||||||||||| ||||| | |||||| || | || Sbjct 2725 AAGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 2784 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | || | || | |||||| || | || || Sbjct 2785 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 2843 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || ||||| || | || || || ||||||||||| Sbjct 2844 CTCAAGAGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 2891 >seq11150 Length=2949 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| ||| || ||| |||||| || |||||| | | ||||| || | | || || Sbjct 1843 CACCAGATGCAGGGTGGACTCTTTCTGGATGTTGCAGTGTGAGAGACTGTGGCCATCCTC 1784 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||| |||||||| |||| | ||||||| || || | |||||| ||||| Sbjct 1783 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGTCTTG 1724 Query 33660 AATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 |||||| ||| | | | | |||||| || | || || |||| ||||| || || Sbjct 1723 AATTTTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCTT 1664 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | | || |||||||||||||||| Sbjct 1663 GTCTTTGAGGGTCCTTACAAAGATCTGCAT 1634 >seq19391 Length=1377628 Score = 86.0 bits (94), Expect = 4e-12 Identities = 141/201 (70%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 33550 AGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTT 33609 || ||| ||| || || |||||||| || ||||| ||||| | || |||| | ||| Sbjct 1322782 AGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTATTTG 1322723 Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 |||||||| |||| || ||| || || | | | |||||| ||||| |||||| | Sbjct 1322722 CCGGCAAATATCAGACACTGTTGGTCAGGTGAGATACCTTCCTTGTCTTGAATTTTGGCT 1322663 Query 33670 TTCAACATAGTCACGG-TGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| | |||| || | || || |||| ||||| || || || | | Sbjct 1322662 TTGA-CATTCTCAGTGATGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCCATCAG 1322604 Query 33729 CGTTTTTACAAAGATCTGCAT 33749 || || |||||||||||||| Sbjct 1322603 GGTCTTCACAAAGATCTGCAT 1322583 >seq16305 Length=36878 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | |||| | || || |||||| || ||||||||||| || Sbjct 3042 CCACCCCTCAGACGCAGGACCAGGCGCAGGGTCGACTCTTTCTGGATGTTGTAATCAGAA 3101 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || ||||| || | | |||||| || | || Sbjct 3102 AGAGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGAGGGGG 3161 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || ||| |||| || | |||||| || | ||||| Sbjct 3162 ATGCCTTCTTTATCTTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCAC 3220 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | || || || |||||||||||| Sbjct 3221 CTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATA 3269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328588136154240