Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq22126 95.1 1e-14 seq17644 91.5 1e-13 seq15423 84.2 2e-11 seq5596 84.2 2e-11 seq20631 82.4 7e-11 >seq22126 Length=6662745 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| |||| || | | | |||||||| || ||||||||||| || ||| || Sbjct 461649 CAAGCGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAAGGTGCG 461590 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | ||| || || ||||| |||||||| Sbjct 461589 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCGATCTCTGCTGGTCAGGAGGGATGCCTTC 461530 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 ||| || || ||| || | | || | || || | ||||| || || || Sbjct 461529 TTTGTCCTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCACGGGT 461470 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGC 132121 | || || ||||||||||| || ||||| |||||| Sbjct 461469 GATGGTCTTGCCAGTCAGAGTCTTCATGAAGATCTGC 461433 >seq17644 Length=22291198 Score = 91.5 bits (100), Expect = 1e-13 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| || ||||| | |||||||||||||||||| ||| ||||| || ||||| | Sbjct 3012393 TGTACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAGGTTCTGCTGGT 3012334 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||||||| || | ||||| ||||||| ||||| Sbjct 3012333 TGCTCTTCCGATTACAGGAATCTTTATAGAGCATATACGG 3012294 >seq15423 Length=9779632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| | |||||||||||||| || ||||| |||||| || || || || | | Sbjct 6864541 GACTCCATCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 6864482 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | || ||||| ||||| || ||||| ||||| ||||| || | Sbjct 6864481 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATTTTGGCCTTTACA 6864422 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||||| | || || ||||||| || | || || || || |||||||| Sbjct 6864421 TTTTCTAACGTATCCGAGGGTTCAACTTCGAGGGTAATAGTCTTCCCCGTAAGAGTTTTC 6864362 Query 132110 ATGAAAATCTGCAT 132123 | ||||||||||| Sbjct 6864361 ACAAAAATCTGCAT 6864348 >seq5596 Length=5364348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| ||||| || | | |||||||| || ||||||||||| | |||||| Sbjct 2613010 CAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGATAGGGTACG 2613069 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | |||||| |||||||| || | | |||| | | ||| || || ||||| |||||||| Sbjct 2613070 CCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 2613129 Query 132025 TTTATC 132030 || || Sbjct 2613130 CTTGTC 2613135 >seq20631 Length=3741062 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 131911 CAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATC 131970 ||| |||| ||| | | ||||| ||||||||||||||||| | ||||| ||| Sbjct 1078074 CAACACCAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGAGTACGTCCATC 1078015 Query 131971 TTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATC 132030 ||| || || || || | |||||| || | || ||||| ||||| || ||||| ||||| Sbjct 1078014 TTCTAGTTGCTTGCCAGCATAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1077955 Query 132031 GGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT 132090 || || || | | ||| ||||| | || || || | || || | || Sbjct 1077954 CTGGATCTTGGCCTTTACGTTTTCTTTCGTATCTGAGGGTTCAACCTGGAGGGTGATAGT 1077895 Query 132091 TTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | || |||||||| |||||||||||||| Sbjct 1077894 CTTCTCCGTAAGAGTTTTCATGAAAATCTGCAT 1077862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476438893135920