Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq12486 172 4e-38 seq16616 116 3e-21 seq19633 104 2e-17 >seq12486 Length=6174982 Score = 172 bits (190), Expect = 4e-38 Identities = 482/735 (66%), Gaps = 15/735 (2%) Strand=Plus/Plus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAATTCAAAGTCAT 111622 ||| ||| | ||||| || ||||| ||||| || | || || | | |||||| | Sbjct 2654183 AAACAGCCATTTCCATTTTAATAGCTGGATGTGGATTGTACCCTTCAACCTTAAAGTCTT 2654242 Query 111623 CAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGGG 111682 ||| || || ||||| ||||| |||| ||| || |||||||| || || Sbjct 2654243 CAGTTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGTTTTGGGAAAGGTC 2654302 Query 111683 TAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCAT 111742 | || | ||| |||||| | || | |||| |||||||| | |||| ||| |||| Sbjct 2654303 TGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCAT 2654362 Query 111743 CTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTATG 111802 |||| | | ||| | || || | |||| || || |||||||| || |||||||| Sbjct 2654363 CTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCGCGATCATGTACA 2654422 Query 111803 TGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTTT 111862 |||| || || || || ||||| || |||||||||||||| || |||||||||| | Sbjct 2654423 TGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGTCTCCCGATCGCT 2654482 Query 111863 GATATAGCTGACATGATAGTTTATTTTGTGACACATAAAATTGACAAAGTACATGACAAG 111922 | || ||||| || || || | | | ||| || || || || || |||| || | Sbjct 2654483 GGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAGAGGGCATGGCATG 2654542 Query 111923 GAGGCAATGCCATCCCATTCATA---AAGGGTCCCCATGCACACATGATCATCCTTCTGC 111979 |||||| |||||| | | | || ||| | ||| |||| || |||||| Sbjct 2654543 GAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGTGCACGTGATGATTCTTCTGT 2654602 Query 111980 TGTAGCGATTATGTTCAATGTCGTGTATGACATTCAAGAGCTGGTCTATCCCTTTACCAG 112039 | | || || ||| || || || | || ||||| | ||||| || | Sbjct 2654603 CATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTTTCCTG 2654662 Query 112040 TATAATCCGCCTGACATCCA---GTGTATGTTGCCCCATAGTGTCTCCATTGGAATCCAT 112096 ||||| |||| ||||| | ||| ||||||| | || ||||||||||| |||| Sbjct 2654663 AATAAT----CTGA-ATCCATATCTCTATTCTGCCCCAAAATGCCTCCATTGGAAGCCAT 2654717 Query 112097 AAATAGGCCCCAGATCTCCCGGGGCTGTATCTGGAAATTGCTCTCTATTCAACAAATCAC 112156 ||| || |||| || || || | | | ||| | |||| || || | | Sbjct 2654718 AAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGT--C 2654775 Query 112157 TTCTAAT--ATGAGGATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGT 112214 || || || | || ||| || |||||||| || || | | |||| |||||||| Sbjct 2654776 TTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAGCATTTGT 2654835 Query 112215 GGATCCTCTAATAAACCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGT 112274 |||||| | |||||||| | ||| || |||| ||| || |||||| ||| || || Sbjct 2654836 GGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGT 2654895 Query 112275 AGTTAGCAGTGGaaa 112289 |||||||| ||||| Sbjct 2654896 TGTTAGCAGAGGAAA 2654910 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| || |||||||| || || || | |||| | |||||||||||||| | ||||| Sbjct 332300 ATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAA 332359 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGaaa 112289 ||| ||||| || |||| ||| || |||||| ||| || || || ||||| ||||| Sbjct 332360 CCACAGCAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTGTCAGCAGAGGAAA 332419 >seq16616 Length=7972016 Score = 116 bits (128), Expect = 3e-21 Identities = 121/159 (76%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| || |||||||| ||||| || ||| || |||||||| || |||||| Sbjct 2012186 CCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGCACA 2012245 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||||||||| ||||||||||| || || ||||| || || || | | | |||| Sbjct 2012246 CCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACCACA 2012305 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || |||| || ||||||| |||||| Sbjct 2012306 TAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 2012344 >seq19633 Length=3468624 Score = 104 bits (114), Expect = 2e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 112170 ATTCCAAATCTTCACTCCTTTAGATGATAACTCTCTTGCATTTGTGGATCCTCTAATAAA 112229 || ||| || |||||||| || ||||| | |||| | |||||||||||||| | ||||| Sbjct 1959803 ATCCCAGATTTTCACTCCCTTGGATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAA 1959744 Query 112230 CCATAGCAATTCTTCCACAACCCCTTTCCAGTACACTCTTTTAGTAGTTAGCAGTGGaaa 112289 ||| |||||||| |||| ||| || |||||| ||| | ||| || || ||||| ||||| Sbjct 1959743 CCACAGCAATTCCTCCAAAACACCCTTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAA 1959684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391807444320286