Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq22719 100 3e-16 seq21804 95.1 1e-14 seq8394 95.1 1e-14 seq27380 91.5 2e-13 seq12132 91.5 2e-13 seq23499 87.8 2e-12 >seq22719 Length=8987742 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 8554982 CCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 8554923 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||||||||| || |||||| Sbjct 8554922 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 8554863 Query 74889 GCGACAAGGCGTT 74901 || |||| ||||| Sbjct 8554862 GCTACAACGCGTT 8554850 >seq21804 Length=12154212 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || ||||||||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 4279113 GTAAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4279172 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | ||||| ||||||||||| |||||||| || ||| Sbjct 4279173 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4279232 Query 117425 ATCGT 117429 || || Sbjct 4279233 ATAGT 4279237 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || ||||| || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 4279113 GTAAAAATGTAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 4279172 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | ||||| ||||| || |||||||||||||||||| Sbjct 4279173 CCAATAGGCTGAAGTAAGTTAATATTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 4279232 Query 152149 ATCGT 152153 || || Sbjct 4279233 ATAGT 4279237 >seq8394 Length=4799471 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| |||| || |||||||| Sbjct 667373 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 667314 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 667313 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 667254 Query 152149 ATCGT 152153 || || Sbjct 667253 ATGGT 667249 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | || |||| ||||||||||||| || | ||||| || || Sbjct 667373 GTGAAGATGTATCGTGGACTAGCAGAATCCTTGCCACCATGTAGCCTGGTACCAAACTGA 667314 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 667313 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 667254 Query 117425 ATCGT 117429 || || Sbjct 667253 ATGGT 667249 >seq27380 Length=10165399 Score = 91.5 bits (100), Expect = 2e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 7666513 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 7666572 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || |||| || |||||| |||||||||||||| || |||||||| Sbjct 7666573 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 7666632 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 7666633 ACGACCCGTT 7666642 >seq12132 Length=2475592 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 56980 CCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 56921 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| |||||||||||||| || |||||| Sbjct 56920 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAG 56861 Query 74889 GCGAC 74893 || || Sbjct 56860 GCTAC 56856 >seq23499 Length=2348749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 || ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||| Sbjct 2215932 CCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 2215991 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || | ||| || |||| || |||||| ||||| |||||||| || |||||| Sbjct 2215992 TTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAAATGCCTTCCACTGCAGCAAAG 2216051 Query 74889 GCGACAAGGCGTT 74901 || || | |||| Sbjct 2216052 GCTACGACACGTT 2216064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547018167735600