Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq22996 104 3e-17 >seq22996 Length=989293 Score = 104 bits (114), Expect = 3e-17 Identities = 558/883 (63%), Gaps = 13/883 (1%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || ||||||| |||||||| || || || || || ||| | |||||||| Sbjct 691900 GCCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCACCACAA 691841 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 |||||| ||| | || | || |||||||||||||| || ||||| |||| ||| | Sbjct 691840 GATCGAAATGCTTGACAGGCTACTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCAT 691781 Query 13790 CCACGTGGACTCCAAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 || |||||| || ||| || | || | | | | | || ||| || Sbjct 691780 TCATGTGGACAAAAAATCCAAGGATTCCTATTTAGCTGCAGTGAT--GGGCATTGCTTCC 691723 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 || ||| ||| || ||||| ||| || | ||||| || | || ||||| Sbjct 691722 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 691663 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| ||||||| ||||||| |||||| |||| | || |||| | Sbjct 691662 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCTCTACGCAATGAAGGCAAACTGGAAG 691603 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || | || || || || ||||| || || | || |||||||| || || || || Sbjct 691602 TACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGG 691543 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCAC--A 14085 ||| ||| || || | ||| |||||| | ||| | ||||| | ||| | Sbjct 691542 AAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCC-ATCCAATAA 691484 Query 14086 AGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || | | | | ||| || | | ||| || || | || ||||| | Sbjct 691483 AGAAGAAAGGTGGAAA-AAGCGGTATGAGGT---CATTAATGGAAAGTTGACAAACACAG 691428 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 | | ||| | | || ||||| | ||| | ||| | || | || ||||||| Sbjct 691427 GGACTGTCAAAGTGCTTCCTCCGCTGGAAACACCCCTTTTTTCTGGCAGTGCCTACTTTG 691368 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||||| |||||| |||| | || || || | || | | | ||| Sbjct 691367 TGGTCAGTAGGGAGTATGTGGCGTATGTACTACAGAATGAAAAAATCCAAAAGTTTATGG 691308 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| | ||||| || ||||| || ||| | || ||||| ||| | ||||| || | Sbjct 691307 AGTGGGCACAAGACACATATAGCCCTGATGAGTATCTCTGGGCTACCATCCAGAGGAT-T 691249 Query 14326 ACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCC 14384 | | | |||||| | | | || | |||||||| || |||||| || Sbjct 691248 CCTGAAGTCCCGGGCTCACTCTCTGCCAGCCATAAGTACGATTTGTCTGACATGCACGCG 691189 Query 14385 AAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTAC 14444 | | |||||| ||||||||||| |||| ||||| ||| | || || || | ||| Sbjct 691188 ATTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGATGTTTCCAAGGGTGCTCCCTAC 691129 Query 14445 CCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAG 14504 || || |||||||| | ||||| | | | | ||||| ||||| | |||||| |||| Sbjct 691128 CCACCCTGCGACGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCTGGCGACTTGAAC 691069 Query 14505 TGGCTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 ||| || | || | ||| |||| ||||| ||||| |||| Sbjct 691068 TGGATGCTGCGCAAGCACCACTTGTTTGCCAATAAGTTTGACG 691026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658501049310720