Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq13033 109 3e-19 seq7161 102 5e-17 seq24317 93.3 3e-14 seq19391 86.0 4e-12 seq17755 86.0 4e-12 seq26070 82.4 5e-11 >seq13033 Length=3880709 Score = 109 bits (120), Expect = 3e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 3665182 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 3665241 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| || |||||||| | |||||| ||||| || || Sbjct 3665242 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGG 3665301 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| | Sbjct 3665302 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 3665360 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | ||| || || || || || | || |||||||| |||||||| Sbjct 3665361 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3665409 >seq7161 Length=8644359 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| |||| | |||| ||||| || || ||| ||| || || ||||| || |||| Sbjct 6018496 CGCCACCTCGCTGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG 6018555 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 | || || | | || || || ||||| | ||||||||| | |||||| ||||| || | Sbjct 6018556 AGAGCGTGTGGCCATCCTCCAGCTGTTTGCTGGCAAATATCAGACGCTGCTGGTCAGGTG 6018615 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | |||||||||||| ||| ||| | ||| || | ||| ||||| | ||| Sbjct 6018616 GGATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCG 6018674 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | ||| || || || || || | || |||||||| |||||||| Sbjct 6018675 ACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 6018724 >seq24317 Length=2447881 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/240 (69%), Gaps = 13/240 (5%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 1085108 GCCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 1085167 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || || || || ||||| ||||||||||| | |||||| ||||| || || Sbjct 1085168 GAGCGTGCGGCTATCCTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 1085227 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTT--------AACGAT----AAAATTGTGTC 34646 | |||||||||||| ||| ||| | ||| || || || || ||||| Sbjct 1085228 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGGTCATGACACTATTCTCAATATAGTGTC 1085286 Query 34647 TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||| || || | ||| || || || || || | || |||||||| |||||||| Sbjct 1085287 ACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCACAAAGATCTGCAT 1085346 >seq19391 Length=1377628 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 34493 GCAACACCAAATGG-AGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||| ||||| || || ||| |||||| || ||||| || ||||| || || || | Sbjct 1322797 GCAGCACCAGGTGCCAGGGTGGACTCCTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 1322738 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || | ||| ||||||||||| | || ||||||||| || | | || |||||| Sbjct 1322737 TCCTCCAGCTATTTGCCGGCAAATATCAGACACTGTTGGTCAGGTGAGATACCTTCCTTG 1322678 Query 34612 TCTGTGATCTTTTGTTTTAACGATAAAATTG-TGTCTTCGCTCTCCACTTCCACGGTTAT 34670 ||| ||| ||| | ||| || | | || |||| | ||| ||||| | ||| || Sbjct 1322677 TCT-TGAATTTTGGCTTTGACATTCTCAGTGATGTCACTGGGCTCGACTTCAAGGGTGAT 1322619 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || | | || |||||||| |||||||| Sbjct 1322618 GGTCTTGCCCATCAGGGTCTTCACAAAGATCTGCAT 1322583 >seq17755 Length=25620257 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/154 (73%), Gaps = 1/154 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || |||| ||||| || || ||| ||| || || ||||| || ||||| Sbjct 14325065 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 14325006 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || ||||| || ||||||| | |||||| ||||| || || Sbjct 14325005 GAGCGTGCGGCCATCCTCCAGCTGTTTGCCAGCAAATACCAGACGCTGCTGGTCAGGTGG 14324946 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC 34632 | |||||||||||| ||| ||| | ||| || Sbjct 14324945 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGAC 14324913 >seq26070 Length=4351986 Score = 82.4 bits (90), Expect = 5e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 34488 AAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCG 34547 ||| | |||||| | ||| ||||| |||||| |||||||| || || || || || || Sbjct 512817 AAGTCTCAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAGAGTACG 512758 Query 34548 CTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTC 34607 ||||||| ||||| || || ||||| || | | || || || || || | ||| || Sbjct 512757 TCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 512698 Query 34608 CTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||| || |||||| |||| | || || || | || || || | ||| Sbjct 512697 CTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCAAGGGTTCAACCTCGAGGGT 512638 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || || || || || | |||||||| ||||||||||| ||| Sbjct 512637 GATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTTTG 512595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314618661946826