Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq13603 185 7e-42 seq3843 167 2e-36 seq5064 163 2e-35 seq12486 134 1e-26 seq6486 123 2e-23 seq13160 113 4e-20 seq16616 111 1e-19 seq18696 89.7 4e-13 >seq13603 Length=4153961 Score = 185 bits (204), Expect = 7e-42 Identities = 374/548 (68%), Gaps = 9/548 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||||| || | || |||||||| || || || | | ||||| Sbjct 1089328 CTAAACTGCATCGTCGCTGTGTCCCAGAACATGGGCATCGGCAAGAACAGGGACCTGCCC 1089387 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| | |||| || | |||||| | | || || | Sbjct 1089388 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTA 1089447 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||||||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 1089448 GAAGATAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 1089505 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||| | || | || || | || | Sbjct 1089506 AGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCGGCAGGGAACTCAAGAAACCTC 1089565 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | ||| | || | || ||| | || Sbjct 1089566 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGATGATGCCTTAAAACTTACTGAACAAC 1089625 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || || | ||||||||||| |||||| || || | ||| ||| Sbjct 1089626 CAGAATTAGCAAATAAAGTAGACATGATTTGGATAACTGGTGGCAGTTCCATTTATAAGG 1089685 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | |||||| | |||||||| |||| | ||| Sbjct 1089686 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGATCATGCAGGACTTT 1089744 Query 2554 GAATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTT 2613 ||| |||| || | || ||||||||| || | ||||| |||| || | |||| Sbjct 1089745 GAAAGTGACACGTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATAC 1089804 Query 2614 CCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATAT 2673 |||||||||||||||| | || || || || || |||| ||||||||||| ||||| Sbjct 1089805 CCAGGTGTTCCCTCTGATGCCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATAT 1089864 Query 2674 Gaaaaaaa 2681 || || || Sbjct 1089865 GAGAAGAA 1089872 >seq3843 Length=8268663 Score = 167 bits (184), Expect = 2e-36 Identities = 184/245 (75%), Gaps = 0/245 (0%) Strand=Plus/Minus Query 1281 GAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACT 1340 ||||| | ||||| |||||||| ||| ||| | |||||||||||||| | |||||| Sbjct 8032006 GAAGTCCTGATTGTGACATGGCAGAAAAAGAAACCTGCAAGCCCAGAAAACGTAGCCACT 8031947 Query 1341 TTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACT 1400 | || || | | ||||| || || ||||| || || || || || ||||||| || Sbjct 8031946 TACAGCAACAGCTATGGGGTGGTGGTCCAGCCTGCCTATAAGGACAAGTTGAACATTACC 8031887 Query 1401 GAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGG 1460 |||| ||||| |||||| |||| || ||||||||||| || || |||| ||||||||| Sbjct 8031886 CAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATACCACCCTGGAGGATGAAGGG 8031827 Query 1461 TGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTA 1520 || |||| |||| || || || ||||| | ||||||| | ||||||| || || || Sbjct 8031826 TGTTACATGTGTCACTTCAATACCTTTGGTTATGGGAAGTTCTCAGGAACAGCCTGCCTC 8031767 Query 1521 ACCCT 1525 ||||| Sbjct 8031766 ACCCT 8031762 >seq5064 Length=10951 Score = 163 bits (180), Expect = 2e-35 Identities = 371/549 (68%), Gaps = 18/549 (3%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || ||| | || | || |||||||| || || || || | ||||| Sbjct 10134 CTAAACTGCATCATCGCTATGTCCCAGAACATGGGCATCGGCAAGAACGGTGACCTGCCC 10193 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGACATCTTCTTC--CACT- 2256 ||||| || || | |||||||| | |||| || | |||||| | | || || | Sbjct 10194 TGGCCGCCGCTCAGGAATGAATTCAGGTATTTCCAGAGAATGACCACGACCTCTTCAGTA 10253 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || ||||| ||| | || |||||||| || ||||| ||||| || |||| | | | Sbjct 10254 GAAGATAAACAAAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCC--TGAGA 10311 Query 2317 AGCA--GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCAC 2374 || | | ||||| || | ||||| ||| | |||||||| || | || || || || | Sbjct 10312 AGAATCGACCTTTAAAGGATAGAATTAATGTAGTTCTCAGCAGGGAACTCAA-GAACCTC 10370 Query 2375 CACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGAC 2434 ||| || ||||| ||| |||| | |||| | || | || | || |||| | || Sbjct 10371 CACAAGGAGCTCATTTTCTTGCCAGAAGTCTGAATGATGCCTTAAAACTTATTGAACAAC 10430 Query 2435 CAGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGG 2494 |||||||| | | | || | | |||||||||||||||||| || | || ||| ||| Sbjct 10431 CAGAATTAGCAAATAAAGTAGGCATGATTTGGATAATTGGTGGCAGTTTCGTTTATAAGG 10490 Query 2495 AGAGCATTACAAGA-TCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTT 2553 | ||| | | | | || | | | |||||| | |||||||| | ||| Sbjct 10491 A-AGCCATGGATCACCCAGGCCATCTTAAACTGTTTGTGACAAGGAT-------CACTTT 10542 Query 2554 GAATGTGATACA-TACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATT 2612 ||| |||| ||| | || ||||||||| || | ||||| |||| || | |||| Sbjct 10543 GAAAGTGACACATTTTTTTCCAGAAATTGATTTGGAGAAATATAAACTTCTGCCAGAATA 10602 Query 2613 TCCAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATA 2672 |||||||||||||||| | || || || || || |||| ||||||||||| |||| Sbjct 10603 CCCAGGTGTTCCCTCTGATGCCCAGGAGGAGAAAGGCATTAAGTACAAATTTGAAGTATA 10662 Query 2673 TGaaaaaaa 2681 ||| || || Sbjct 10663 TGAGAAGAA 10671 >seq12486 Length=6174982 Score = 134 bits (148), Expect = 1e-26 Identities = 404/613 (66%), Gaps = 18/613 (3%) Strand=Plus/Plus Query 118456 AGTTGGAGTTTCAGTGGCTCAATGTGATTCATATAGACATGAGCATCCCCAATTGTATGT 118515 || || | |||||||||||| |||||||||| || | ||| ||||| || | |||||| Sbjct 2654317 AGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTATGT 2654376 Query 118516 ATGAATTCACCAGGTGTAAGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAG 118575 | || ||||| || | || || || | ||| || |||||||| | | || ||| Sbjct 2654377 ACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCGCGATCATGTACATGAGCAGGGCCTAG 2654436 Query 118576 CTGGCTACATTAAAAGGAACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAA 118635 ||||| | || ||||| ||||| || || |||||| | |||| |||||||| ||||| Sbjct 2654437 CTGGCGATGTTGAAAGGCACACCTAGGCCGATGTCTCCCGATCGCTGGTACAGCTGGCAG 2654496 Query 118636 GAGAGCTCCCCGTTTGCAACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || ||||| || || | || || ||||| | | | || ||||||||||| |||| Sbjct 2654497 GACAGCTCACCATTCACCACTTAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 2654556 Query 118696 GAACTCAGTTGGGCAGGATTCCAGGCTGTTAAAACATG--CCTTCTGCTAT-ATGGTTCT 118752 | || | |||||||| | || | ||| |||||| || | |||| Sbjct 2654557 AGAGGAAGATCTCTTGGATTCCAAG-TG-CACGTGATGATTCTTCTGTCATCAGGGTTGG 2654614 Query 118753 ACCTGTATACCCTCAATTAAATTCTGAATCTGATCCACACCCTTTCCAGTATACTGAGAC 118812 || || ||||| | | || | || || || || ||||| | ||| | || Sbjct 2654615 TTTTG-ATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTTTCCTGAATAATCTGAA 2654673 Query 118813 TCGCATCCTTTATATTCTGCCCCAAAAAATCTCCATTGAAAACCATAAACAGGCCCCAGA 118872 || ||| | | ||||||||||||||| |||||||| || |||||||| || |||| Sbjct 2654674 TC-CAT-ATCTCTATTCTGCCCCAAAATGCCTCCATTGGAAGCCATAAACTGGGCCCAAG 2654731 Query 118873 TCTCC-----CTGGGACCTAAAATCTAAACCTACTTTTCTCTGAAATTCTTTTGACCCAT 118927 || || || | | | |||| || ||| || | |||| |||| | |||| Sbjct 2654732 TCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTA----TC-CAGAAAGTCTTGGTATCCAT 2654786 Query 118928 TAGCATTCCAAATAGCAACTCCtttttttGCCAGATCATTAGAGTTTGTAGAACCACTTA 118987 | |||| ||| || ||||| || | ||| || | || ||||| || || | | Sbjct 2654787 TGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAGCATTTGTGGATCCCTTGA 2654846 Query 118988 AAAACCAAAGAAGCTCCTCAACAACGCCTCTCCAAAAAACTGTTTTTGTTGTAAACAGTG 119047 |||||| | | |||||| | ||| || |||| || | || ||||| | ||| | Sbjct 2654847 TAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTGTTAGCAGAG 2654906 Query 119048 GAAACTGACCTCT 119060 |||| | | |||| Sbjct 2654907 GAAATTCATCTCT 2654919 >seq6486 Length=167444 Score = 123 bits (136), Expect = 2e-23 Identities = 359/546 (66%), Gaps = 9/546 (2%) Strand=Plus/Plus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || | ||| | | | || ||||||||||| || | || ||||| Sbjct 73385 CTAAACTGCATGGTCGCTATGTTCCAGAACATGGGCATTGGCAAGATCGGGGTCCTGCCC 73444 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATG---ACATCTTCTTCCACT 2256 ||||| | || | |||||||| | |||| || | ||| ||| | ||||| Sbjct 73445 TGGCCACTGCTCAGGAATGAATTCAGGTATTTCCAGAGGATGACCACAACCTCTTCAGTA 73504 Query 2257 GACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAA 2316 || |||||||| | || |||||||| || ||||| || || | |||| | | | Sbjct 73505 GAAGGTCAACAGAATCTGGTGATTATGGGTAGGAAGACCTGCTTCTGCATTCC--TGAGA 73562 Query 2317 AGCA-GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 || | | |||| || | ||||| ||| | |||||||| ||| | || || || || || Sbjct 73563 AGAATCGACTTTAAAATATAGAATTAATTTAGTTCTCAGCAGAGAACTCAAGGAACCTCC 73622 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435 || || ||||| ||| |||| | |||| | | | | || | || |||| | ||| Sbjct 73623 ACAAGGAGCTCATTTTCTTGCCAGAAGTCTGGCTGATGCCTTAAAATTTATTGAACAACC 73682 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 ||||||| | | | || ||| ||| |||||| ||||||| || ||||| | | | || Sbjct 73683 AGAATTAGCAAATAAAGTAGATGTGATATGGATAGTTGGTGGCAGTTCTGTTTGTAAAGA 73742 Query 2496 GAGCATTACAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 ||| | | || | | | || | | | ||||||||| |||| | || || Sbjct 73743 AGCCATGAATCACCCAGGCCATCTTAAACTATATGTGACAAGGATTATGCAGGACTTGGA 73802 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | |||| || | || |||||||| || | |||||||||| || | ||| | || Sbjct 73803 AAGTGACAC-TTTTTTTCAGAAATTGATTTGGAGAAATACAAACTTCTGCCAGAA-TACC 73860 Query 2616 AGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGa 2675 |||||||| |||| || || | | || || |||| ||| ||||||| || |||| Sbjct 73861 CGGTGTTCCATCTGATGTCCAGAAGGGGAAAGGCATTAAGTACGAATTTGAAGTA-ATGA 73919 Query 2676 aaaaaa 2681 || || Sbjct 73920 GAATAA 73925 >seq13160 Length=7925295 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||| | ||||| || ||||||||| Sbjct 254807 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 254866 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 254867 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 254926 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || || ||||||||| || Sbjct 254927 ATCGCGCTGTGGATGACCGA 254946 >seq16616 Length=7972016 Score = 111 bits (122), Expect = 1e-19 Identities = 121/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || || || | ||| || |||||||| || | || ||||||||| | || ||||| Sbjct 2012183 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 2012242 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 ||||| || ||||||||| | ||||||||||||| |||||||| ||||| ||||| | Sbjct 2012243 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACC 2012302 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCAT 118694 ||||| ||||| | | | || ||||||||||| |||| Sbjct 2012303 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 2012343 >seq18696 Length=4270456 Score = 89.7 bits (98), Expect = 4e-13 Identities = 178/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 2155 GCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCATGGCCTCCTCTTAAA 2214 ||||| || | || |||||||||| | || || | | || || || || | | Sbjct 3478483 GCTGTTTCCCAGAAGATGGGCATTGTCAGGAATGGGGACATACCCTGACCCTGGCTCAGA 3478542 Query 2215 AATGAATTTAAACATTTTCAAAAAATGAC---ATCTTCTTCCACTGACTTAAAACAGAAT 2271 ||| |||| || || ||||||||||| | | ||||| || ||||||||| Sbjct 3478543 AATAAATTCAA----TTCCAAAAAATGACCACAACCTCTTCAGTAGAAGGTAAACAGAAT 3478598 Query 2272 GTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA-AAGCAGGCCTTTGAA 2330 | ||| ||||| | |||| ||| ||||||||| || | || || ||| | ||| || Sbjct 3478599 CTAGTATTTATGAGTAGAA-GACCTGGTTTTCAATTACTGAAAATAATCAGTC-TTTAAA 3478656 Query 2331 CAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGTGGGGCTCACTT 2390 ||||||| ||| | |||||||||||| | || || || ||||||| | ||| |||| Sbjct 3478657 GTACAGAATTAATTTAGTTCTCAGTAGAGAACTCAAGGAACCACCACAAAGAGCTAACTT 3478716 Query 2391 TGTTGCAAAAAGTATAGAT 2409 | |||| ||||| | ||| Sbjct 3478717 TCTTGCCTAAAGTCTGGAT 3478735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414330702368008