Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq12486 264 9e-66 seq16616 145 6e-30 seq19633 127 2e-24 seq24003 107 2e-18 seq5064 105 5e-18 seq13603 104 2e-17 seq26307 91.5 1e-13 >seq12486 Length=6174982 Score = 264 bits (292), Expect = 9e-66 Identities = 447/650 (69%), Gaps = 5/650 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| |||||| || | || |||||||| |||| || || | ||| | |||| Sbjct 2654292 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2654350 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| || || ||||| || ||||| | || || |||| ||| | Sbjct 2654351 AAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCG 2654410 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | ||||||||| |||| || | |||||||||||||| || ||||| || || || |||| Sbjct 2654411 CGATCATGTACATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGT 2654470 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACA 29849 | || || | |||||| |||||||| || ||||| || | ||| || ||||| || | Sbjct 2654471 CTCCCGATCGCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAGA 2654530 Query 29850 TGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGA 29909 ||||||||| ||||| || ||||| ||| | ||| | || ||||| | ||| || Sbjct 2654531 GGGCATGGCATGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGTGCACGTGA 2654590 Query 29910 TGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCA 29969 |||| | ||||| || |||||| | ||||| ||| | | ||||||| || || | Sbjct 2654591 TGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAA 2654650 Query 29970 CCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACT 30029 | || | || || || |||| | ||||||||||| | Sbjct 2654651 CTCCTTTTCCTGAATAATCTG--AATCCATATCTCTATTCTGCCCCAAAATGCCTCCATT 2654708 Query 30030 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCA 30089 |||| || || || || |||| ||| || ||||| ||| ||| ||| | |||| Sbjct 2654709 GGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCA 2654768 Query 30090 AAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGG 30149 ||||||| | | || ||||| |||||||| || || ||||| | ||||||| | Sbjct 2654769 GAAAGTCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTTCAG 2654828 Query 30150 AGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCC 30209 |||||||| || ||| ||||||| || |||||||| || ||||||| || | Sbjct 2654829 CATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAACAGAT 2654888 Query 30210 TCTTGGTCGTGAGGAGGGGAAACT-GTCCCTTGAGGCCGTACCTCGCCTG 30258 | ||| || || || ||||| | || || | ||| ||| | |||||| Sbjct 2654889 GTTCGGTTGTTAGCAGAGGAAATTCATCTCTCG-GGCTGTAGCGCGCCTG 2654937 Score = 181 bits (200), Expect = 9e-41 Identities = 313/460 (68%), Gaps = 2/460 (0%) Strand=Plus/Plus Query 29800 CTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGCATGGCA 29859 |||||| |||||||| || ||||| |||| ||| || ||||| || | ||||||||| Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 29860 CGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCT 29919 ||||| || ||||| ||| | ||| | || ||||| || |||| |||||| | || Sbjct 332048 TGGAGGCAGCGCCATCAGAGGAAGATCTCTTGGATTCCAAGCGCACATGATGATTCTTCT 332107 Query 29920 GTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCC 29979 ||| || |||||| | ||||| ||| | | ||||||| || || || || || Sbjct 332108 GTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTGTCC 332167 Query 29980 CGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTA 30039 || || |||| | ||||||||||||||||| || || Sbjct 332168 TGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCCATA 332227 Query 30040 CACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCT 30099 || || |||| ||| || ||||| ||| ||| ||| | |||| |||||||| Sbjct 332228 AACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTCTCG 332287 Query 30100 GGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGA 30159 ||| || ||||| |||||||| || || ||||| || |||||||| | |||||||| Sbjct 332288 GGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGA 332347 Query 30160 CCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 30219 || ||| |||||||||| |||||||| || ||||||| || | | ||| || Sbjct 332348 TCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAACAGATGTTCGGTTGT 332407 Query 30220 GAGGAGGGGAAACT-GTCCCTTGAGGCCGTACCTCGCCTG 30258 || || ||||| | || || | ||| ||| | |||||| Sbjct 332408 CAGCAGAGGAAATTCATCTCTCG-GGCTGTAGCGCGCCTG 332446 >seq16616 Length=7972016 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || ||| Sbjct 2012183 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 2012242 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| |||| | Sbjct 2012243 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACC 2012302 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 2012303 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAGA 2012347 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 || |||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 2016376 AAGTGCCTCCACTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAAT 2016435 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | |||| ||| |||| ||| || ||||| |||||||| || || ||||| Sbjct 2016436 CCCAAGCTATCCAGAAAATCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 2016495 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGA 30167 || |||||||| | |||||||| || |||| Sbjct 2016496 GACAGCTCTTTAGCATTTGTGGATCC-CTGA 2016525 >seq19633 Length=3468624 Score = 127 bits (140), Expect = 2e-24 Identities = 197/281 (70%), Gaps = 3/281 (1%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| || || |||| ||| ||| Sbjct 1959895 AAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGT---CCCCTTCTCTGGCGGAGAAT 1959839 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 1959838 CCCAAGCTATCCAGAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAT 1959779 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCC 30196 || |||||||| | |||||||| || ||| |||||||||| ||||||| || || Sbjct 1959778 GACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACACCC 1959719 Query 30197 TTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTCGCC 30256 ||||| || | | ||||| || || || ||||| | | | |||| ||| | |||| Sbjct 1959718 TTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGCGCC 1959659 Query 30257 TGAGACCCAAACATGGACAAGACTCCCGTGCCTGTCCTGTC 30297 || | |||| |||| | |||||||| || | ||| Sbjct 1959658 TGCCTGCAGAACACCGACAGGGTCCCCGTGCCGGTGCGGTC 1959618 >seq24003 Length=1483050 Score = 107 bits (118), Expect = 2e-18 Identities = 185/261 (71%), Gaps = 12/261 (5%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || || | Sbjct 479906 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 479847 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 479846 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 479787 Query 114382 CTGCTTACC-TCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTG 114439 ||| ||||| ||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 479786 CTGTTTACCTTCTAT-TGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT- 479730 Query 114440 CAAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACA 114498 ||| | || |||| ||||| || || || || ||||| |||||| ||||| | Sbjct 479729 -----TCTGAGTGGCGGCCAGGGCAGGTCCCCCTTCTTGCCGATACCCATGTTCTGG-GA 479676 Query 114499 CGCTGCCACGATACCGTTCAG 114519 | | || ||||| | ||| || Sbjct 479675 CACAGCGACGATGCAGTTTAG 479655 >seq5064 Length=10951 Score = 105 bits (116), Expect = 5e-18 Identities = 168/236 (71%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || |||| | | ||||||||||| ||||| || | || || | Sbjct 10384 ATGAGCTCCTTGTGGAGGTTCTTGA-GTTCCCTGCTGAGAACTACATTAATTCTATCCTT 10326 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 10325 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 10266 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 || ||| || | ||||| || | |||| | ||| | || | | || || || Sbjct 10265 TTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATT-- 10209 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGG 114495 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| Sbjct 10208 ----CCTGAGCGGCGGCCAGGGCAGGTCACCGTTCTTGCCGATGCCCATGTTCTGG 10157 >seq13603 Length=4153961 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || | || || ||||||| ||| ||||| || | || || | Sbjct 1089579 ATGAGCTCCTTGTGGAGGTTTCTTGAGTTCCCTGCCGAGAACTACATTAATTCTATCCTT 1089520 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 1089519 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 1089460 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| ||| || | ||||| || | |||| | ||| | || | | || || || Sbjct 1089459 CTGTTTATCTTCTACTGAAGAGGTCGTGGTC-ATTCTCTGGAAATACCTGAATTCATT-- 1089403 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 1089402 ----CCTGAGCGGCGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 1089348 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 1089347 ACAGCGACGATGCAGTTTAG 1089328 >seq26307 Length=1940483 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || ||||||||||| ||||| || | || || | | ||||| |||||| || || Sbjct 153258 TTGAGTTCCCTGCTGAGAACTACATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGA 153199 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| ||| || Sbjct 153198 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTATCT 153151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406020032802892