Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq12486 302 3e-77 seq19633 156 3e-33 seq16616 125 5e-24 >seq12486 Length=6174982 Score = 302 bits (334), Expect = 3e-77 Identities = 429/598 (72%), Gaps = 9/598 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 ||||||||| |||||| || | || |||||| | ||||| || || | ||||| ||||| Sbjct 2654292 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2654350 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || || ||||||| || || ||||| || ||||| | || || |||| ||| | Sbjct 2654351 AAATATGTGCATCTCCCAAAGTATGTACAAAGTCACCCGGCTTCAGGCCCGTGATGTGCG 2654410 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 27283 | ||||||||| |||| || | |||||||||||||| || || || || || || |||| Sbjct 2654411 CGATCATGTACATGAGCAGGGCCTAGCTGGCGATGTTGAAAGGCACACCTAGGCCGATGT 2654470 Query 27284 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATA 27343 | ||||| | |||||| ||||| || || ||||| |||| || || ||||| || | Sbjct 2654471 CTCCCGATCGCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACTTAGAACTGGCAGA 2654530 Query 27344 TGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACA 27400 ||| ||||| ||||| || ||||| |||| ||| ||| | || ||||| | |||| Sbjct 2654531 GGGCATGGCATGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGTGCACG 2654587 Query 27401 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 27460 |||||| | ||||| || |||||| | ||||| ||| | | ||||||| || | Sbjct 2654588 TGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGT 2654647 Query 27461 CCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCC 27520 | || || | || || || ||| ||| || | || ||||| || |||||||||| Sbjct 2654648 CAACTCCTTTTCCTGAATAATCTGAATCCATATC--TCTATTCTGCCCCAAAATGCCTCC 2654705 Query 27521 ATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 27580 ||||||| || || || || |||| ||| || ||||| ||| ||| ||| | | Sbjct 2654706 ATTGGAAGCCATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTAT 2654765 Query 27581 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 27640 ||| ||||||| | | || ||||| |||||||| || || ||||| | ||||||| Sbjct 2654766 CCAGAAAGTCTTGGTATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGGCAGCTCTT 2654825 Query 27641 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 27698 | |||||||| || ||| ||||||| || |||||||| || ||||||| || Sbjct 2654826 CAGCATTTGTGGATCCCTTGATAAACCACAACAACTCCTCCAAAACACCCTTCCAGAA 2654883 Score = 201 bits (222), Expect = 8e-47 Identities = 291/408 (71%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 27294 CTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGCGTGGCA 27353 |||||| ||||| || || ||||| || | || || ||||| || | ||| ||||| Sbjct 331988 CTGGTACAGCTGGCAGGACAGCTCACCGTTCACCACTTAGAACTGGCAGAGGGCATGGCA 332047 Query 27354 CGGAGGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGCGCACACGATGATGCG 27410 ||||| || ||||| |||| ||| ||| | || ||||| ||||||| |||||| | Sbjct 332048 TGGAGGCAGCGCCATCAGAGG---AAGATCTCTTGGATTCCAAGCGCACATGATGATTCT 332104 Query 27411 CCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCAT 27470 ||||| || |||||| | ||||| ||| | | ||||||| || || || || Sbjct 332105 TCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACTCTTTGCAGTTGGTCAACTCCTTG 332164 Query 27471 CCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCC 27530 || || || ||| ||| || |||| ||||| || ||||||||||| ||||| || Sbjct 332165 TCCTGAATAATCTGAATCCATATCTCTGTATTCTGCCCCAAAATGCCTCCACTGGAAGCC 332224 Query 27531 GTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTC 27590 || || || |||| ||| || ||||| ||| ||| ||| | |||| |||||| Sbjct 332225 ATAAACTGGGCCCAAGTCCCCTTCTTCTCTGGCGGAGAATCCCAAGCTATCCAGAAAGTC 332284 Query 27591 TCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGT 27650 || ||| || ||||| |||||||| || || ||||| || |||||||| | ||||| Sbjct 332285 TCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGT 332344 Query 27651 GGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 27698 ||| || ||| |||||||||| |||||||| || ||||||| || Sbjct 332345 GGATCCCTTGATAAACCACAGCAACTCCTCCAAAACACCCTTCCAGAA 332392 >seq19633 Length=3468624 Score = 156 bits (172), Expect = 3e-33 Identities = 278/404 (69%), Gaps = 5/404 (1%) Strand=Plus/Minus Query 27388 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 27447 ||||| | ||||| |||||| | ||||| || |||||| | ||||| ||| | | Sbjct 1960016 TTCCAAGTGCACATGATGATTCTTCTGTCATCAGGGTTGGTTTTGATGGTGTCAATCACT 1959957 Query 27448 TTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCT 27507 ||||||| || || || || || || || ||| ||| || |||| ||||| Sbjct 1959956 CTTTGCAGTTGGTCAACTCCTTGTCCTGAATAATCTGAATCCATCTC--TGTATTCTGCC 1959899 Query 27508 CCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCG 27567 || ||||||||||| ||||| || || || || |||| || || |||| ||| | Sbjct 1959898 CCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAGT---CCCCTTCTCTGGCGGAG 1959842 Query 27568 AAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTC 27627 || ||| | |||| |||||||| ||| || ||||| |||||||| || || ||||| Sbjct 1959841 AATCCCAAGCTATCCAGAAAGTCTCAGGATCCATTGGCATCCCAGATTTTCACTCCCTTG 1959782 Query 27628 TCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACG 27687 || |||||||| | |||||||| || ||| |||||||||| ||||||| || Sbjct 1959781 GATGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACA 1959722 Query 27688 GCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTTGAGGCCGTACCTG 27747 ||||||| || | | ||||| || || || ||||| | | | |||| ||| | Sbjct 1959721 CCCTTCCAGAACAGACATTTGGTTGTCAGCAGAGGAAATTCATCTCTCAGGCTGTAGCGC 1959662 Query 27748 GCCTGAGAACCAAACACGGACAAGACTCCCGTGCCCGTCCTGTC 27791 ||||| | ||||| |||| | |||||||| || | ||| Sbjct 1959661 GCCTGCCTGCAGAACACCGACAGGGTCCCCGTGCCGGTGCGGTC 1959618 >seq16616 Length=7972016 Score = 125 bits (138), Expect = 5e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||||||||| || | ||||||||| ||||| || || Sbjct 2012183 AGGCCCGTGATGTGCGCGATCATGTACGTGAGCAGGGCGTAGCTGGCAATGTTGAAAGGC 2012242 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| ||||| |||||||| ||||| || || ||||| || | Sbjct 2012243 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAAGACAGCTCACCGTTCACC 2012302 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 2012303 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATCAG 2012346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369376953561782