Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq25381 183 4e-41 seq16774 111 2e-19 >seq25381 Length=27760200 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || ||||||||||| Sbjct 8844199 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCACACT 8844140 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 |||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 8844139 CTGTTGTGTTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 8844080 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 | || || || || || | |||| | || || |||| ||||| |||||||| | Sbjct 8844079 ACTTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 8844020 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 8844019 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 8843971 Score = 168 bits (186), Expect = 1e-36 Identities = 231/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| || || ||||| | Sbjct 8845950 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTG 8845891 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| ||| ||||| ||||| || || Sbjct 8845890 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTTGAAACCCACTTCTCCACCAAAA 8845831 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || ||||| || |||| || ||||| | ||| Sbjct 8845830 GTGCTTGGCTTCCAGTAGGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAAGAG 8845771 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 || || || || | || | || ||||||| |||||||| | ||||| |||||||| Sbjct 8845770 AATGGTGCTCCAACTTCTACCATAGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 8845711 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||| ||| |||| ||| || || || || | | || Sbjct 8845710 ACCAGAAGGGCAGGATACAGCTCCATAGCATCGATGTCACCATACAGTGCTTTCAACTCT 8845651 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 ||||| || ||||| |||||||| Sbjct 8845650 GCAGCCATTTCCTTCTCTCCTGT 8845628 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||||||||| || ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 8843037 TCTTACCCCGTGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 8842978 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 8842977 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 8842918 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 8842917 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 8842880 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967 |||||||| || || | ||||| || || || | ||| || ||||| || || | Sbjct 8842425 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 8842366 Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| | Sbjct 8842365 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAGGTT 8842306 Query 10028 GGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 || || || |||||||||| ||||| |||| Sbjct 8842305 GGTGGACTCTCAATCAAATGTGATCTGGCTGA 8842274 Score = 87.8 bits (96), Expect = 3e-12 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | |||||||| || || | Sbjct 8844788 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 8844729 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | || || |||||||||| || ||| | |||| || || | || ||| | Sbjct 8844728 AGTAACATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTAGTTCTGGTCATGAATTT 8844671 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 8844670 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 8844611 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 8844610 GATTTTGGTACTGGAA 8844595 >seq16774 Length=14477005 Score = 111 bits (122), Expect = 2e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || ||||| || ||||| ||||||||||| |||| | Sbjct 3481345 TCTTGACGATGTTAAAGCCCATCTCACCGCCAAACGTGCTCGGCTTCCAGTATTCCGGAG 3481286 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 3481285 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 3481226 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | ||| | ||||| Sbjct 3481225 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 3481166 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || | || | || || || |||||| | |||||| Sbjct 3481165 ACGCATCAATGTCTCCATACAACTCCTCCAACTCCGCTGCCATCTCCCTCTCTCCT 3481110 Score = 91.5 bits (100), Expect = 2e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || || |||||||| || ||||| || | ||| || || Sbjct 3472868 TCACCTATGAGGATGAGGCGGGTCGTCTGGAAGAGCTGCTCATCGCCCCAGGTGGGGTGC 3472809 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || |||||| | || ||||| | ||||| || | ||||||| ||||| |||| | Sbjct 3472808 TCAGCTTTCAGCAGGTCACACACACGATTGTGCTCGCGCAGCCAGAGCGTGGCATACAGC 3472749 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCA 9394 ||||||||||| | ||| ||||| |||| || || || |||| Sbjct 3472748 ATGAGCCCAGGAAGCAGCCCAAACACCTCCTGGCCCACGGCCA 3472706 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 9650 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 9707 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 3470693 CTCACCCCATGGCCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 3470636 Query 9708 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 9767 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 3470635 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 3470576 Query 9768 CGGGAGTGAAGGTCCTCC 9785 | || |||| |||||| Sbjct 3470575 CAGGTATGAACTTCCTCC 3470558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716617631114880