Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aotus_20nancymaae_20[refseq_20GCF_5F000952055.2_202017-06-09] 28,922 sequences; 2,861,684,817 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2233 116 3e-21 seq17446 95.1 1e-14 seq16235 95.1 1e-14 seq16305 93.3 4e-14 seq11150 89.7 5e-13 seq21804 82.4 7e-11 seq20385 82.4 7e-11 >seq2233 Length=2295209 Score = 116 bits (128), Expect = 3e-21 Identities = 166/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| ||||| Sbjct 1388467 ACAGCCCCCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 1388408 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 1388407 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 1388348 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | ||||| || | ||| Sbjct 1388347 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTC 1388288 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||||| |||| || || || ||||| ||||| ||||| |||||||| || Sbjct 1388287 CACCTCCAGGGTTACGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 1388234 >seq17446 Length=896517 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/215 (71%), Gaps = 5/215 (2%) Strand=Plus/Minus Query 41654 ACCAGATG-CAGCGTGCTCTCCTTCTGAATGTTATAGTC-GGAGAGGGTGCGCTCGTCGT 41711 ||||| || ||| || ||| ||||| ||||| ||||| ||| | ||||| ||| | Sbjct 702165 ACCAGGTGGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGGAAATAGTGCGG--GTCTT 702108 Query 41712 -CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 | ||||||||||| || || || || | ||| ||||| | ||||| || ||||| ||| Sbjct 702107 TCTAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 702048 Query 41771 ATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 ||| || ||||| | ||||| || | ||||||||||| || || || Sbjct 702047 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGGTC 701988 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || ||||| ||||| ||||| |||||||| || Sbjct 701987 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 701953 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| ||||| || ||| ||||| ||||| || || Sbjct 702417 ACAGCCACCCCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATC 702358 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| | || || ||||||||||| || || || || | ||| ||||| | Sbjct 702357 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 702298 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || ||||| ||| ||| || ||||| | ||||| || | ||| Sbjct 702297 GGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTC 702238 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCA-GCGTCTT---TACGAAAATCTGCAT 41862 ||| |||| || || || || || || | ||||||| |||||| ||| |||| Sbjct 702237 CACTTCCAGGGTGATGGTCTTGCCGGTGAGGCGTCTTTCATACGAAGATC-GCAT 702184 >seq16235 Length=7452127 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||||||||| ||| ||| ||||| ||||| |||| ||||| || | | || || Sbjct 4796021 CACCAGATGCAGGGTGGACTCTTTCTGGATGTTGCAGTCTGAGAGACTGTGGCCATCCTC 4796080 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| |||||||| |||||||| |||| ||||| | || | | ||||||| | | Sbjct 4796081 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGT-CTT 4796139 Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| |||| || | | ||||| || | ||| ||||| | || || || | Sbjct 4796140 GAATTTTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCT 4796199 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | | | || ||| |||| || |||||||| Sbjct 4796200 TGTCTTTGAGGGTCCTTACAAAGATCTGCAT 4796230 >seq16305 Length=36878 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 || ||| || | ||||| | ||||| |||| || ||| ||||| ||||| || || Sbjct 3038 ACAGCCACCCCTCAGACGCAGGACCAGGCGCAGGGTCGACTCTTTCTGGATGTTGTAATC 3097 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || || ||||| |||| || ||||||||||| || || || || | ||| ||||| Sbjct 3098 AGAAAGAGTGCGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGAG 3157 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTC 41811 ||| | || || || || ||| || ||||| | ||||| || | ||| Sbjct 3158 GGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTC 3217 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||||| || || || || || || || ||||| ||||| |||||||| Sbjct 3218 CACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 3268 >seq11150 Length=2949 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 |||||||||||| ||| ||| ||||| ||||| ||| ||||| || | | || || Sbjct 1843 CACCAGATGCAGGGTGGACTCTTTCTGGATGTTGCAGTGTGAGAGACTGTGGCCATCCTC 1784 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||| |||||||| |||||||| |||| ||||| | || | | ||||||| | | Sbjct 1783 CAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGATGGGATACCTTCCTTGT-CTT 1725 Query 41773 GATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 || |||| |||| || | | ||||| || | ||| ||||| | || || || | Sbjct 1724 GAATTTTGGCTTTGACATTCTTAATGGTGTCACTAGGCTCAACCTCAAGGGTGATGGTCT 1665 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | | | || ||| |||| || |||||||| Sbjct 1664 TGTCTTTGAGGGTCCTTACAAAGATCTGCAT 1634 >seq21804 Length=12154212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| || ||| ||||| ||||||||||| ||||| | | | Sbjct 5963387 AGGCGCACCACCAGGTGCAGGCTGGACTCTTTCTGGATGTTATAGTCTGAGAGAGCGTGG 5963328 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| ||||| || |||||||| |||| ||||| | || | | |||| Sbjct 5963327 CCATCCTCCAGCTGTTTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGAGACCCTCC 5963268 Query 41765 TTGTC 41769 ||||| Sbjct 5963267 TTGTC 5963263 >seq20385 Length=15889662 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/214 (69%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 41655 CCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGA 41714 |||| ||||| || ||| ||||| |||| ||||| || || |||| | || | | Sbjct 15770366 CCAGGTGCAGGGTCGACTCTTTCTGGGTGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCA 15770425 Query 41715 GCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGA 41774 |||||||||| || || || || | ||| ||||| | ||| | || ||||| ||| || Sbjct 15770426 GCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGTGGGGATGCCTTCCTTATCCTGGA 15770485 Query 41775 TTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCG---TTATCGTTT 41831 | || ||||| | | ||||| || | ||||||||||| | | || || | Sbjct 15770486 TCTTGGCCTTCACATTTTAGATGGTGTCACTAGGCTCCACCTCCAGGGTGATGATGGTCT 15770545 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 | || |||| ||||| || || |||||||| || Sbjct 15770546 TGCCGATCAGGGTCTTCACAAAGATCTGCATTTT 15770579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462136865546400