Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1004 271 8e-68 seq798 268 1e-66 seq435 268 1e-66 seq1721 102 8e-17 seq2320 93.3 4e-14 >seq1004 Length=155834243 Score = 271 bits (300), Expect = 8e-68 Identities = 508/735 (69%), Gaps = 15/735 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || | |||| || | || || || |||||||| || || || || Sbjct 136911631 ACTCCCATCCTCTGATGCTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 136911572 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 136911571 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 136911514 Query 16782 GTTCGGCGATTAA-TCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTC 16840 |||| | |||| ||| || |||||||| || | ||||| ||||| ||| ||| Sbjct 136911513 GTTCCA-GCTTAAGTCTGTCTGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTC 136911455 Query 16841 ATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 || || || || || || | || || || | | || ||||| ||| || Sbjct 136911454 ATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCA 136911395 Query 16901 TCCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 |||| || | |||| ||||| || ||| | ||| || ||||| |||||| Sbjct 136911394 CTGATAATTAT--TTCTTACTCTCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGAACATC 136911337 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||| | Sbjct 136911336 AGGCAAGCAAAATCACAGTGTAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATG 136911277 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | | |||||| |||||||||||| | ||| ||||| | || || || ||||||||| Sbjct 136911276 AGGCTAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 136911217 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 || || || || || | ||||| || | | ||||| | || || || ||||||| Sbjct 136911216 AAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCC 136911157 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 | |||||| | |||| || || || | ||| | ||| ||||||||| ||||| Sbjct 136911156 CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 136911097 Query 17201 TT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGT 17258 || | | || ||| | ||| |||| | || |||| || || || ||| || || | Sbjct 136911096 TTGAAGAGAAATTC-CCTTTCCCTG-GGATCTTTTATGTAAGTGTCAATG---AGACTAT 136911042 Query 17259 ACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCG 17318 ||||||| || |||||||| |||||||| || || || || || || || |||||||| | Sbjct 136911041 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 136910982 Query 17319 CTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCG 17378 || |||||||| | ||||| ||| | | ||||| ||||| ||||| ||||||| Sbjct 136910981 TGATCTGAACTTCTTGGCTAAATCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCG 136910922 Query 17379 CGGCGAAAAACGCCA 17393 | || || || |||| Sbjct 136910921 CTGCAAAGAAAGCCA 136910907 >seq798 Length=25304 Score = 268 bits (296), Expect = 1e-66 Identities = 595/881 (68%), Gaps = 14/881 (2%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || | || || | |||||||| || || | | Sbjct 1704 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGT 1645 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 1644 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAA--AACCCA 1587 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| || || ||||| || || | ||| | ||| ||| |||| Sbjct 1586 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCA 1527 Query 16842 TTCCTATAAGACGT-ACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCT 16900 | || || | || | || || | || || || | || || ||||| ||| | Sbjct 1526 TCCCAATGA-ACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAA 1468 Query 16901 TCCTTAATAATACTAGCA-ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACAT 16959 || |||| || || | |||| ||||| || ||| | ||| || ||||| ||||| Sbjct 1467 TCAATAATTATT-TATCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACAT 1409 Query 16960 CAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGT 17019 ||| || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| Sbjct 1408 CAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGT 1349 Query 17020 CAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAA 17079 | || |||||| |||||||||||| | ||| ||||| | || || || |||||||| Sbjct 1348 GAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAA 1289 Query 17080 GAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTT 17139 ||| | || || || | ||||| || | | ||||| | || || |||||||||| Sbjct 1288 GAAGACGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTC 1229 Query 17140 ACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||| | |||| || || || | ||| | ||| ||||||||| ||||| Sbjct 1228 CCCAATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGC 1169 Query 17200 CTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || | | || ||| | |||| | | || ||||||| || || || | || || Sbjct 1168 ATTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTA 1111 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 |||||||| || |||||||| |||||||| || || || || || || || |||||||| Sbjct 1110 TACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCT 1051 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTC 17377 | || ||||||| | | ||||| ||| | | ||||| || || ||||| || || Sbjct 1050 GTGATCTGAACTTACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTC 991 Query 17378 GCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGC 17437 | || || || |||| | || || || ||| |||| || || | || | Sbjct 990 ACTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTTTCCTCGGGCTTCAGGGATTCC 931 Query 17438 CAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCC 17497 |||| | | ||| | |||| | ||||| || |||| |||||| || ||| | ||| Sbjct 930 CAGTGC--TGAATGTCTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAGGCCTCCGCC 873 Query 17498 TTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || ||| | | | | | ||||| | ||| | | |||||| Sbjct 872 TTCTTACATGTCTGCGAGATATCGTGGTACTCGACGGGGAA 832 >seq435 Length=190850796 Score = 268 bits (296), Expect = 1e-66 Identities = 591/879 (67%), Gaps = 9/879 (1%) Strand=Plus/Minus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || | || || | || || || |||||||| || || || || Sbjct 47340665 ACTCCCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGT 47340606 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAG-TAG-CTGAAAATATTTTAGAGTACCCCA 16781 || ||||||||||| || ||||| ||||| || ||||||| || | | |||| Sbjct 47340605 GAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAA--AACCCA 47340548 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 |||| || | ||| || |||||||| || || |||| ||||| ||| ||| Sbjct 47340547 GTTCCAGCATAAGTCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCT 47340488 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || | || || || | | || ||||| || || | Sbjct 47340487 TCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCAT 47340428 Query 16902 CCTTAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCA 16961 |||| || |||| ||||| || ||| | ||| || ||||| ||||||| Sbjct 47340427 TGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCA 47340368 Query 16962 GACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCA 17021 | || || ||||| || ||||| ||||| |||||||| |||||||| ||||||||||| | Sbjct 47340367 GGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGA 47340308 Query 17022 ACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGA 17081 || |||||| |||||||||||| | ||| ||||| | || || || |||||||||| Sbjct 47340307 GGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGA 47340248 Query 17082 ATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTAC 17141 | || || || || | ||||| || | | | ||| | || || | ||||||| | Sbjct 47340247 AGATGCCTTCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCC 47340188 Query 17142 GAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCT 17201 |||||| | ||| || || || | ||| | ||| ||||||||| ||||| | Sbjct 47340187 CAATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCAT 47340128 Query 17202 T--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTA 17259 | | | || ||| | |||| | | || |||| || || || || || || || || Sbjct 47340127 TGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATA 47340070 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 |||||| || |||||||| |||||||| || || || || || || || | |||||| | Sbjct 47340069 CATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGT 47340010 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 || |||||||| | |||| ||| | | ||||| || || ||||| || || || Sbjct 47340009 AATCTGAACTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGC 47339950 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCA 17439 || || || |||| | ||| || || ||| | || ||||| | || ||| Sbjct 47339949 TGCAAAGAAAGCCAGAACATGGGATATAAAGTATCTCTCCTCCGGCTTCAGGGATTCCCA 47339890 Query 17440 GTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTT 17499 || | | || ||||| | ||||| || | || |||||| || ||| | ||||| Sbjct 47339889 GTGCCAAATGTCCTTGGACAGGTCCACCTCCT-GGCGGTCCAGAAGGAGGCCTCCGCCTT 47339831 Query 17500 TTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 |||||||| | ||| ||||| | ||| | |||||||| Sbjct 47339830 CTTATACATCTGCCAGATATCGTGGTACTCCATGGGGAA 47339792 >seq1721 Length=108792865 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| ||||||||||| | || |||||| ||||||||||| Sbjct 98462389 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 98462448 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 98462449 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 98462508 Query 17106 C 17106 | Sbjct 98462509 C 98462509 >seq2320 Length=142054208 Score = 93.3 bits (102), Expect = 4e-14 Identities = 351/544 (65%), Gaps = 10/544 (2%) Strand=Plus/Minus Query 16981 TAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCG 17040 ||| ||||| || ||||| ||||| || ||||||||||| | || | |||| ||| | | Sbjct 131601593 TAAACCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTG 131601534 Query 17041 TTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGC 17100 |||||| | ||| |||||| || || || ||| || |||| | || || || || Sbjct 131601533 TTTCTTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGC 131601474 Query 17101 AAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCA 17160 ||| || | ||||| ||| || || |||||||| |||||| | |||| Sbjct 131601473 AAAGGCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACACAAGGCCCA 131601414 Query 17161 CTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTT--AAATAATTTCTCTTTT 17218 || || | | ||| | ||| |||| |||| ||||| || | | || ||| |||| Sbjct 131601413 ATCTGCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCCTTTC 131601354 Query 17219 TCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTC 17278 | ||| ||| || | | || || | | || | | ||| || || | ||||| Sbjct 131601353 T-TTGT-TGTC--TTTAACATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTT 131601298 Query 17279 TCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAG 17338 ||||| || || || || || || ||||| || ||| | |||||||| | Sbjct 131601297 TCCATAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACA 131601241 Query 17339 AATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATA 17398 ||| | ||| | | ||||| | || ||||| || | || | || || | || ||| Sbjct 131601240 AATTGCTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATA 131601181 Query 17399 TGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGAT 17458 || || |||||| || | || || | || | ||||| || | |||||| | Sbjct 131601180 TGGGATATAAAATATCTTACCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCTTTGAAC 131601121 Query 17459 ATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATA 17518 | ||||| || | || |||| || | | ||| || ||||| || ||||||||| Sbjct 131601120 AGGTCCACATCCTGGGCCATCCAGAAGGAAATCTTTGCTTTCTTATA-ATTTTCCAAATA 131601062 Query 17519 TCAT 17522 |||| Sbjct 131601061 TCAT 131601058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517453703309400