Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq435 257 2e-63 seq1004 255 6e-63 seq798 241 1e-58 seq2320 93.3 4e-14 seq1882 93.3 4e-14 seq1721 89.7 5e-13 >seq435 Length=190850796 Score = 257 bits (284), Expect = 2e-63 Identities = 580/859 (68%), Gaps = 17/859 (2%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| ||||| || | || ||||| |||||||| ||||| ||||| Sbjct 47340635 TTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTC 47340576 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATT 16049 || ||||||| ||| | ||||||||| | | ||| ||||||||||| | Sbjct 47340575 TCTACTCTGAAAAC--CTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCTACAAACT 47340518 Query 16050 CTATATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 | || |||| ||||| ||| |||||| | || || || || || | || | Sbjct 47340517 CAATGCATTGCTTCATTAGAGT-GCAATTCTTCCCAATGAGCTTCACAGGCAAGGCCTCA 47340459 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 || | | | ||||||||| || || | |||| || || | ||| || Sbjct 47340458 GTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAATTATTTCTCTTACTCTCTCCTCT 47340399 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 || ||| | || ||| ||||| ||||| || || || || || || |||| || || Sbjct 47340398 GATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCA 47340339 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||||||| |||||||| || ||||| || | || ||||| |||||||||||| | | Sbjct 47340338 TCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGC 47340279 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 |||||||| | ||||| || || |||||||| || || || || | ||||| || | Sbjct 47340278 CAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACG 47340219 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | | ||| | || |||| ||||| | | |||||| | ||| || || || Sbjct 47340218 ACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCAGGGCAAGGTCCAATCTGCATTC 47340159 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATAT 16466 | || | |||| ||||||||| ||||| || | | || ||| | |||| | || Sbjct 47340158 TTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCC--TTTCGTTGGGAT 47340101 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 | |||| || || ||||| || | ||| |||||||| || |||||||| || ||||| | Sbjct 47340100 CTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 47340041 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 | || || |||||||| || | || || | || || ||||| | ||||| ||| Sbjct 47340040 TTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAATCACTCCA 47339981 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAAT 16644 ||| ||| ||||| || || || |||||||| ||||| || ||| || ||| | | || Sbjct 47339980 CCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGGAT--AT 47339923 Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704 || ||| | || || | | || | ||| | | || ||||| | ||||| Sbjct 47339922 AAAGTATCTCTCCTCCGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGGTCCAC 47339863 Query 16705 TTCTTCTGGC-GTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGT 16763 || ||||| ||||| ||| ||| | ||||| |||||||| | ||| ||||| | || Sbjct 47339862 --CTCCTGGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACATCTGCCAGATATCGTGGT 47339805 Query 16764 ATTGTATGGGAAATACGAC 16782 | | ||||| || | ||| Sbjct 47339804 ACTCCATGGGGAAAATGAC 47339786 >seq1004 Length=155834243 Score = 255 bits (282), Expect = 6e-63 Identities = 489/707 (69%), Gaps = 19/707 (3%) Strand=Plus/Minus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || ||||||||||| ||||| || | || ||||| |||||||| ||||| ||||| Sbjct 136911601 TTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTC 136911542 Query 15992 G-TAG-CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA--TCTATCTGCTACAAA 16047 || ||||||| ||| | ||||||||| | || | ||| ||||||||||| Sbjct 136911541 TCTACTCTGAAAAC--CTTGCTAAAACCCAGTTCC--AGCTTAAGTCTGTCTGCTACAAA 136911486 Query 16048 TTCTATATATTGACACATTA-AGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTT 16106 || | ||||| ||||| ||| |||||| || || || || || || | || | Sbjct 136911485 CTCAACGTATTGCTTCATTAGAGT-GCAATTCATCCCAATGAGCTTCACAGGCAAGGCCT 136911427 Query 16107 TTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTT 16166 || | | | ||||||||| ||| || |||| || || | ||| | Sbjct 136911426 CAGTGAGGAGCTCCTGTTCTATCGGAACAGCACTGATAATTATTTC--TTACTCTCTCCT 136911369 Query 16167 CAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTT 16226 | || ||| | || ||||||||| ||||| || || || || || || |||| || | Sbjct 136911368 CTGATGGTTTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCT 136911309 Query 16227 CGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTA 16286 | |||||||| |||||||| || ||||| | | | ||||| |||||||||||| | Sbjct 136911308 CCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCGTTTCTTGA 136911249 Query 16287 ACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGA 16346 ||||||||| | ||||| || || |||||||| || || || || | ||||| || | Sbjct 136911248 GCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTA 136911189 Query 16347 TTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTT 16406 | ||||| | || ||||| ||||| | | |||||| | |||| || || | Sbjct 136911188 CGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCT 136911129 Query 16407 TTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAAT 16464 | | || | |||| ||||||||| ||||| || | | || ||| | ||| |||| Sbjct 136911128 TCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC-CCTTTCCCTG-GG 136911071 Query 16465 ATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGC 16524 ||| |||| || || ||||| || ||| |||||||| || |||||||| || ||||| Sbjct 136911070 ATCTTTTATGTAAGTGTCAATGAG---ACTATACATTTCAGAATGTATGTTTTCCATGGC 136911014 Query 16525 TATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTC 16584 || || || |||||||| || || || || | || || ||||| | |||||| || Sbjct 136911013 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTC 136910954 Query 16585 CGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCA 16631 | || |||| |||||||| || || || || || ||||| || |||| Sbjct 136910953 CACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCA 136910907 >seq798 Length=25304 Score = 241 bits (266), Expect = 1e-58 Identities = 516/763 (68%), Gaps = 10/763 (1%) Strand=Plus/Minus Query 15902 ACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAA 15961 || ||||| || || || || | || | || || |||||||||| ||||| | Sbjct 1704 ACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGT 1645 Query 15962 GATATATTTTCCATAAAATCAAAGGGATTAG-TAG-CTGAAAATATCTTAGAGTACCCCA 16019 || ||||| |||||||| ||||| ||||| || ||||||| ||| | |||| Sbjct 1644 GAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAAC--CTTGCTAAAACCCA 1587 Query 16020 GTTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTA-AGTCGCAATTA 16078 ||||| | | ||| ||||| ||||| || || | ||| | ||| ||| |||||| Sbjct 1586 GTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGT-GCAATTC 1528 Query 16079 ATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCT 16138 || || || | || || | || | || | || | ||||||||| ||| | Sbjct 1527 ATCCCAATGAACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAA 1468 Query 16139 TCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATT 16198 || |||| || | | ||| || || ||| | || ||||||||| ||||| Sbjct 1467 TCAATAATTATTTATCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATC 1408 Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || || || || |||| || || |||||||| |||||||| || ||||| || Sbjct 1407 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTG 1348 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAG 16318 | || ||||| |||||||||||| | ||||||||| | ||||| || || |||||| Sbjct 1347 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAG 1288 Query 16319 AATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTA 16378 || | || || || | ||||| || | | ||||| | || ||||| ||||| | Sbjct 1287 AAGACGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCC 1228 Query 16379 CGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCC 16438 | |||||| | |||| || || || | || | |||| ||||||||| ||||| Sbjct 1227 CCAATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCA 1168 Query 16439 TT--AAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGT 16496 || | | || ||| | |||| | ||| ||||||| || ||||| | | ||| | Sbjct 1167 TTGAAGAGAAATTCCC--TTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTAT 1110 Query 16497 ACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCG 16556 ||||||| || |||||||| || ||||| || || || |||||||| || || || || | Sbjct 1109 ACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTG 1050 Query 16557 CTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTG 16616 || || |||| | | |||||| ||| ||| ||| ||||| || || || ||| | Sbjct 1049 TGATCTGAACTTACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCA 990 Query 16617 CAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 | ||||| || |||| | ||| || || ||| |||| || Sbjct 989 CTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTTTCCTC 947 >seq2320 Length=142054208 Score = 93.3 bits (102), Expect = 4e-14 Identities = 350/542 (65%), Gaps = 14/542 (3%) Strand=Plus/Minus Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 || || || ||||| ||||| || || ||||| || | || | ||| ||| | ||||| Sbjct 131601589 CCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTGTTTC 131601530 Query 16283 TTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAA 16342 || | |||||||||| ||||| || || || |||| | || || || ||||| Sbjct 131601529 TTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGCAAAG 131601470 Query 16343 GCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCG 16402 || | ||||| ||| ||||||||||| || |||||| | |||| || Sbjct 131601469 GCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACACAAGGCCCAATCT 131601410 Query 16403 GCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCT 16460 || | | || | |||| |||| |||| ||||| || | | || ||| | |||| | Sbjct 131601409 GCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCC--TTTCTT 131601352 Query 16461 GAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTA 16520 | || || | | || ||| | | | | | | ||| || || | ||||| || | Sbjct 131601351 TGTTGTC--TTTAACATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTTTCCA 131601294 Query 16521 TGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATC 16580 | || || || || ||||||||||| | || | || ||||| | |||| Sbjct 131601293 TAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATT 131601237 Query 16581 GTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTG 16638 | ||| ||| ||| |||| || || || |||| ||| |||| || | | |||||| | Sbjct 131601236 GCTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATATGGG 131601177 Query 16639 CTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATAT 16698 | || |||||| || | |||| | || | ||| | | | |||||| | | Sbjct 131601176 AT--ATAAAATATCTTACCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCTTTGAACAG 131601119 Query 16699 ATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATC 16758 ||||| || | | | |||| ||| | | ||| || ||||| |||||||||||||| Sbjct 131601118 GTCCACATCCTGGGCCATCCAGAAGGAAATCTTTGCTTTCTTATA-ATTTTCCAAATATC 131601060 Query 16759 AT 16760 || Sbjct 131601059 AT 131601058 >seq1882 Length=96796970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| || | Sbjct 92365323 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTTT 92365264 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| | || || |||| || || | Sbjct 92365263 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 92365204 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 92365203 CCACCACTCTTTCC 92365190 >seq1721 Length=108792865 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| || ||||| || | || ||||| |||||||||||| Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 98462509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511323591980600