Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1820 255 7e-63 seq1644 168 8e-37 seq2049 165 1e-35 >seq1820 Length=98464013 Score = 255 bits (282), Expect = 7e-63 Identities = 587/867 (68%), Gaps = 23/867 (3%) Strand=Plus/Plus Query 9508 TTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACT 9567 ||||||||| | || |||||| | || |||||| ||||| || | || || | || Sbjct 21956050 TTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATACAGGAGGCTCCGAATTATGACC 21956109 Query 9568 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTT 9627 || || | ||| | ||| |||| || || ||| |||| || || || || | ||||| Sbjct 21956110 AATATCTACCTGCTCAACCTGGCCATTTCCGACCTGCTCTTCCTCTTCACCCTTCCATTC 21956169 Query 9628 TGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA--C 9685 ||||| |||||||| |||| ||| ||| |||||| | ||||||| | Sbjct 21956170 TGGATCCACTATATC---ATGTGGAGTGACTGGGTTTTTGGCCATGGTATGTGTAAGGCC 21956226 Query 9686 TGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 9745 ||| ||| | | | | ||| | |||||||| || |||||| |||||||||| | | Sbjct 21956227 ATCTCGGGGTTTTATTTCACAGGCT--TGTACAGCGAGATCTTTTTCATCATCCTGTTGA 21956284 Query 9746 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGT 9803 || | |||||||| || || ||||| | || || ||| || ||| | || || Sbjct 21956285 CAATCGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCCCTTCGAGCCC--GCACTGT 21956342 Query 9804 AACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 9862 || | ||| | | ||| | | ||| |||||| |||||| | | | || | Sbjct 21956343 CACTTTTGGTGTCATCACCAGCAT-TGTCACCTGGGGCTTGGCAGTGCTAGCAGCTCTTC 21956401 Query 9863 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTAC 9921 |||||||| |||| || | ||| | | | ||||| | | || | ||| Sbjct 21956402 CTGAATTTATCTTCCAAA-AGACCGAAAACGTTCTCCAAGGGTCTTATTGCAACCCTGTG 21956460 Query 9922 TACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGT 9979 ||||| ||| ||| ||||| | ||| || | | | | | || | || | Sbjct 21956461 TACCCCGAGGATGGAGCACAAAGCT--GGAAGCATTTCTATGCTCTGAGAGTAAACATCT 21956518 Query 9980 TAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGAC 10039 | |||| | ||||||||||| ||||||| |||||||| | |||| ||| || || Sbjct 21956519 TGGTTCTCGCTCTGCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATTGTCAAAACAC 21956578 Query 10040 TGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGG 10099 || ||||| ||||||| || || ||||||||||||||| | ||||| || |||||||||| Sbjct 21956579 TGCTGAGGTGCCCCAGTAAAAAAAAGTACAAGGCCATCCGACTCATTTTAGTCATCATGG 21956638 Query 10100 TGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACG 10159 ||| | ||| |||| ||||||||||||||| | | |||||| || | ||||||||| | Sbjct 21956639 TGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGCTCTCCTTCTCTATACCTTTCAAG 21956698 Query 10160 -CAACCCTTCTTAACCTG-CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGAT 10217 |||| | | | || | || ||| ||||| | ||||| |||| || ||| | Sbjct 21956699 TCAACTTGTTTGGATATGACTGTAAGCA--GAGCAAGGATCTGGACCTGGCCCTACTGGT 21956756 Query 10218 AACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 10277 || | | |||||| | ||||| ||| | ||||| ||||||||||| ||||| || Sbjct 21956757 GACGCAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCGGTGATCTACGCCTTCGTTGG 21956816 Query 10278 GGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTG 10337 |||| ||| | | |||||| |||||||||||||| ||||| | ||||| | | Sbjct 21956817 AGAGAGGTTCCGCAAGTACCTGTGCCACTTCTTCCACAGGCACGTGCTCGTCTACGTGAG 21956876 Query 10338 CAAGTACATCCCCTTCCTGTCTGGTGA 10364 ||| |||||||| ||||| || |||| Sbjct 21956877 CAAATACATCCCATTCCTTCCTAGTGA 21956903 Score = 255 bits (282), Expect = 7e-63 Identities = 587/867 (68%), Gaps = 23/867 (3%) Strand=Plus/Plus Query 176394 TTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACT 176453 ||||||||| | || |||||| | || |||||| ||||| || | || || | || Sbjct 21956050 TTGGGCAATGTGTTGGTGGTGGTGATCCTCATAAAATACAGGAGGCTCCGAATTATGACC 21956109 Query 176454 AACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTT 176513 || || | ||| | ||| |||| || || ||| |||| || || || || | ||||| Sbjct 21956110 AATATCTACCTGCTCAACCTGGCCATTTCCGACCTGCTCTTCCTCTTCACCCTTCCATTC 21956169 Query 176514 TGGATGCACTATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAA--C 176571 ||||| |||||||| |||| ||| ||| |||||| | ||||||| | Sbjct 21956170 TGGATCCACTATATC---ATGTGGAGTGACTGGGTTTTTGGCCATGGTATGTGTAAGGCC 21956226 Query 176572 TGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAA 176631 ||| ||| | | | | ||| | |||||||| || |||||| |||||||||| | | Sbjct 21956227 ATCTCGGGGTTTTATTTCACAGGCT--TGTACAGCGAGATCTTTTTCATCATCCTGTTGA 21956284 Query 176632 CAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGT 176689 || | |||||||| || || ||||| | || || ||| || ||| | || || Sbjct 21956285 CAATCGACAGGTACCTGGCCATTGTCCACGCCGTGTTTGCCCTTCGAGCCC--GCACTGT 21956342 Query 176690 AACCTGTGGCATAGTTACCTGTGTATGT-ACCTGGTTTCTGGCAGGGTTGTTGTCCCTCC 176748 || | ||| | | ||| | | ||| |||||| |||||| | | | || | Sbjct 21956343 CACTTTTGGTGTCATCACCAGCAT-TGTCACCTGGGGCTTGGCAGTGCTAGCAGCTCTTC 21956401 Query 176749 CTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTAC 176807 |||||||| |||| || | ||| | | | ||||| | | || | ||| Sbjct 21956402 CTGAATTTATCTTCCAAA-AGACCGAAAACGTTCTCCAAGGGTCTTATTGCAACCCTGTG 21956460 Query 176808 TACCCAGAG-ATGTCT-ACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGT 176865 ||||| ||| ||| ||||| | ||| || | | | | | || | || | Sbjct 21956461 TACCCCGAGGATGGAGCACAAAGCT--GGAAGCATTTCTATGCTCTGAGAGTAAACATCT 21956518 Query 176866 TAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGAC 176925 | |||| | ||||||||||| ||||||| |||||||| | |||| ||| || || Sbjct 21956519 TGGTTCTCGCTCTGCCTCTGCTCGTTATGGCCATCTGCTACACAGGAATTGTCAAAACAC 21956578 Query 176926 TGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGG 176985 || ||||| ||||||| || || ||||||||||||||| | ||||| || |||||||||| Sbjct 21956579 TGCTGAGGTGCCCCAGTAAAAAAAAGTACAAGGCCATCCGACTCATTTTAGTCATCATGG 21956638 Query 176986 TGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACG 177045 ||| | ||| |||| ||||||||||||||| | | |||||| || | ||||||||| | Sbjct 21956639 TGGTGTTTTTCATTTTCTGGACACCCTACAACCTGGCTCTCCTTCTCTATACCTTTCAAG 21956698 Query 177046 -CAACCCTTCTTAACCTG-CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGAT 177103 |||| | | | || | || ||| ||||| | ||||| |||| || ||| | Sbjct 21956699 TCAACTTGTTTGGATATGACTGTAAGCA--GAGCAAGGATCTGGACCTGGCCCTACTGGT 21956756 Query 177104 AACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGG 177163 || | | |||||| | ||||| ||| | ||||| ||||||||||| ||||| || Sbjct 21956757 GACGCAGGTGATCGCCTACTCCCACTGCTGCGTGAACCCGGTGATCTACGCCTTCGTTGG 21956816 Query 177164 GGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTG 177223 |||| ||| | | |||||| |||||||||||||| ||||| | ||||| | | Sbjct 21956817 AGAGAGGTTCCGCAAGTACCTGTGCCACTTCTTCCACAGGCACGTGCTCGTCTACGTGAG 21956876 Query 177224 CAAGTACATCCCCTTCCTGTCTGGTGA 177250 ||| |||||||| ||||| || |||| Sbjct 21956877 CAAATACATCCCATTCCTTCCTAGTGA 21956903 >seq1644 Length=117903854 Score = 168 bits (186), Expect = 8e-37 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| |||| |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 57521655 AGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 57521714 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| ||| | || Sbjct 57521715 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCACC 57521774 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 57521775 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCAT 57521815 >seq2049 Length=49578535 Score = 165 bits (182), Expect = 1e-35 Identities = 131/157 (83%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||| | |||||||| ||||| ||| || |||||||||||||| |||||||| | ||| Sbjct 28850501 CAGCGTCGCAGCCTCAGCCTGAAGGTCTTCAGCTTTTCCCCCAGAGAGTTCACGTGCTCC 28850560 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | |||||||| || |||||||||||||||||||||||||||||| Sbjct 28850561 TTGAT---GTCTGGGTCATGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 28850617 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 28850618 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 28850654 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 137941 GTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGCTCATGGCCTTGTAGACC 138000 ||||||||||| |||||||||| ||||||||||||||||| |||||||| ||||||| Sbjct 28847917 GTCATGTAGGCTTCTATGTAGTCGATGAAGATGTCAAACTCACTCATGGCTTTGTAGATA 28847976 Query 138001 CCTTTTTCCTGGAGCT 138016 ||||| || ||||||| Sbjct 28847977 CCTTTCTCTTGGAGCT 28847992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589972024488200