Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq274 87.8 1e-12 seq1644 86.0 4e-12 >seq1 Length=210400635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23349 CACCATGGAGGTCCAGATCTTTTAAGCCTTTCCATAAATGGCAAGTCTTGATATCTGACA 23408 ||||| |||| ||| | ||| ||||| ||||||||||| | | ||||| |||| Sbjct 94857833 CACCAAGGAGATCCTGTTCTAGCAAGCCCTTCCATAAATGTTAGGGAATGATAAAGGACA 94857774 Query 23409 TGTGTTCCATTGACGTTAACCATTCTAATTCCATCCTCATTATATGCTCCTGTATATGGT 23468 || | | | ||||||||| ||||||| |||| |||| | || ||||||| ||| Sbjct 94857773 TGGACACTGTCTATATTAACCATTTTAATTCCGTCCTTGTTATTTACTTCTGTATAAGGT 94857714 Query 23469 AAAGGCGGGTCGTCAAATTTTAtttttttCCCATTAACATTCGCTCCCTTAGGAGGCTCC 23528 | || || || |||| | ||| ||||| ||||||||| ||||| | ||| || | | Sbjct 94857713 AGAGAAGGATCAGTAAATCTAATTATTTTCAAATTAACATTTGCTCCTTCAGGGGGATAC 94857654 Query 23529 CA 23530 || Sbjct 94857653 CA 94857652 >seq274 Length=204313951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/224 (70%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 23309 TTGTTTTACAAGAGGTATTTTTTCCTTGGCTGTTCTCAGGCACCATGGAGGTCCAGATCT 23368 |||||||| || | | ||||| || |||||| | ||||| || ||||| ||| | Sbjct 489737 TTGTTTTAAAACACCAAGTTTTTGTTTCTTTGTTCTTATACACCAAGGTGGTCCTGATTT 489678 Query 23369 TTTAAGCCTTTCCATAAATGGCAAGTCTTGATATCTGACATGTG--TTCCATTGACGTTA 23426 | | ||||| ||||||| || ||||| || ||||| | |||| ||| Sbjct 489677 TGCTAATCTTTCTATAAATGTTAAAGTGTGATAGG-GA-ATGTGCATGCCATCTTTATTA 489620 Query 23427 ACCATTCTAATTCCATCCTCATTATATGCTCCTGTATATGGTAAAGGCGGGTCGTCAAAT 23486 | ||| |||| ||||||||||||||||||||||||||||| | | || || | | Sbjct 489619 ATCATGTTAATGCCATCCTCATTATATGCTCCTGTATATGGAACTGTTGGATCAGGTATT 489560 Query 23487 TTTAtttttttCCCATTAACATTCGCTCCCTTAGGAGGCTCCCA 23530 |||||| |||| || ||||| ||||| || ||||| | ||| Sbjct 489559 TTTATTACTTTCATGTTCACATTTGCTCCTTTTGGAGGGTACCA 489516 Score = 84.2 bits (92), Expect = 2e-11 Identities = 155/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 23309 TTGTTTTACAAGAGGTATTTTTTCCTTGGCTGTTCTCAGGCACCATGGAGGTCCAGATCT 23368 |||||||| || | | ||||| || |||||| | ||||| || ||||| ||| | Sbjct 498186 TTGTTTTAAAACACCAAGTTTTTGTTTCTTTGTTCTTATACACCAAGGTGGTCCTGATTT 498127 Query 23369 TTTAAGCCTTTCCATAAATGGCAAGTCTTGATATCTGACATGTG--TTCCATTGACGTTA 23426 | | ||||| ||||||| || ||||| || ||||| | |||| ||| Sbjct 498126 TGCTAATCTTTCTATAAATGTTAAAGTGTGATAGG-GA-ATGTGCATGCCATCTTTATTA 498069 Query 23427 ACCATTCTAATTCCATCCTCATTATATGCTCCTGTATATGGTAAAGGCGGGTCGTCAAAT 23486 | ||| |||| ||||||||||||||||||||||||||||| | | || || | | Sbjct 498068 ATCATGTTAATGCCATCCTCATTATATGCTCCTGTATATGGAACTGTTGGATCAGGTATT 498009 Query 23487 TTTAtttttttCCCATTAACATTCGCTCCCTTAGGAGGCTCCCA 23530 |||||| |||| || ||||| ||||| || || || | ||| Sbjct 498008 TTTATTACTTTCATGTTCACATTTGCTCCTTTTGGGGGGTACCA 497965 >seq1644 Length=117903854 Score = 86.0 bits (94), Expect = 4e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 |||||||| |||||||||||||| ||||| |||||||| || || | || ||||||||| Sbjct 57526169 TATTCTGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGGCCCAAATCCCCTTCTTCT 57526228 Query 97462 CTATCACAGAA-ACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTG 97520 || | | || |||||| |||| | | || | |||||||| |||||||| || | Sbjct 57526229 CTGGCGGAAAATCCCAAGC-TATCCAGAAAGTCTCGGGATCCATTGGCATCCCAGATTTT 57526287 Query 97521 CACACC 97526 ||| || Sbjct 57526288 CACTCC 57526293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346723963561850