Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1820 104 4e-17 seq1441 104 4e-17 seq1004 96.9 5e-15 seq435 95.1 2e-14 seq2049 89.7 8e-13 seq545 87.8 3e-12 seq1556 84.2 3e-11 >seq1820 Length=98464013 Score = 104 bits (114), Expect = 4e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | ||| Sbjct 87532450 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAAT 87532391 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | ||| | ||| ||||||||||| || | || || |||||||| ||| Sbjct 87532390 GACACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGAAGGGGATCCCACCTGACCAA 87532331 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| |||||||| | || ||| | ||| ||||| Sbjct 87532330 CAGCGTCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACACTCTCAGACTATAAC 87532271 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | | | |||||||| |||| Sbjct 87532270 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGTGCCTGCGAGGTGGCATTA 87532219 >seq1441 Length=130397257 Score = 104 bits (114), Expect = 4e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || || ||| |||| | | | Sbjct 119049300 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCATTGAGGTTGAGCCCAGT 119049359 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 119049360 GACACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 119049419 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| | ||||| |||||||| | || || | ||| || || Sbjct 119049420 CAGCGTCTGATATTTGCCGACAAACAGCTAGAGGATGGCCGCACGCTCTCAGACTACAAC 119049479 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 119049480 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 119049531 >seq1004 Length=155834243 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || || ||||| |||||||| || || | || || ||||| | ||| Sbjct 76850213 AAAATTCAAGACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCAGCAAA 76850272 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 ||| ||||| |||| || ||||| ||| || || || || ||||| || || |||| Sbjct 76850273 CAACTAGAGTATAGCCGCACATTCTCAGACTACAAAATCCAGAAAGAGTCCACCCTGCAC 76850332 Query 124743 TTGGTTTTACGTTTACGAGGTGGTATTA 124770 |||| | || |||||||||| |||| Sbjct 76850333 CTGGTGCTGCGCCTACGAGGTGGCATTA 76850360 >seq435 Length=190850796 Score = 95.1 bits (104), Expect = 2e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || | ||| || || || | ||| | || | | | Sbjct 151102156 ATGCAGATCTTTGTGAAGACCCTCACGGCCAAGACCATCACCCTTGAGGTGGAGCCCAGT 151102097 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 151102096 GACACCATTGAGAATGTCAAAGCTAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 151102037 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || ||||| || ||||| |||||||| | || || | ||| || || Sbjct 151102036 CAGCATCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAGACTACAAC 151101977 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| |||| | || | |||||||| |||| Sbjct 151101976 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATTA 151101925 >seq2049 Length=49578535 Score = 89.7 bits (98), Expect = 8e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || |||||||| || || | | ||| | || | | | Sbjct 13381352 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCAGCCTTGAGGTCGAGCCCAGT 13381293 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || || || |||||||| || Sbjct 13381292 GACACTATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGGATCCCACCTGACCAG 13381233 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| || ||||| |||||||| | || || | | | || || Sbjct 13381232 CAGGGTCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAAACTACAAC 13381173 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || || ||||| || || |||| ||| | || | |||||||| |||| Sbjct 13381172 ATCCAGAAAGAGTCCACCCTGCACCCGGTGCTGCGCCTGCGAGGTGGCATTA 13381121 >seq545 Length=171630274 Score = 87.8 bits (96), Expect = 3e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | | | Sbjct 18158850 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 18158791 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || | | ||| | ||| ||||||||||| || || ||||| |||||||| || Sbjct 18158790 GACACCACTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 18158731 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || ||||| || ||||| |||||||| | || || | || || || Sbjct 18158730 CAGCATCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAGGCTACAAC 18158671 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATT 124769 || || ||||| || || |||| |||| | || | |||||||| ||| Sbjct 18158670 ATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGGCATT 18158620 >seq1556 Length=121768101 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || | ||||| || || || | ||| | || | | | Sbjct 87863369 ATGCAGATCTTTGTGAAGACCCTCAGGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87863310 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | |||| ||||||||||| || || ||||| |||||||| || Sbjct 87863309 GATACCATTGAGAATGTCAAACCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 87863250 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || ||||| || ||||| | || ||| | || || | ||| || || Sbjct 87863249 CAGCATCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGTACGCTCTCAGACTACAAC 87863190 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGT 124747 || || ||||| || || |||| |||| Sbjct 87863189 ATCCAGAAAGAGTCCACCCTGCACCTGGT 87863161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755321859344000