Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq545 104 4e-17 >seq545 Length=171630274 Score = 104 bits (114), Expect = 4e-17 Identities = 105/133 (79%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||| | ||||| ||||||||||| ||||||||| | || |||||| Sbjct 78433539 GCATTTTTTGGAGCACAGATGAATTCCTTTATCCATGTGATTATGTACTCATACTATGGT 78433480 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | ||| || ||| |||||||| || || ||||||||||| || || || | Sbjct 78433479 TTAACTGCATTTGGCCC-ATGGATTCAGAAA-TACCTTTGGTGGAAACGATACCTGACCA 78433422 Query 52175 TAATGCAGTTGGT 52187 | ||||| |||| Sbjct 78433421 TGTTGCAGCTGGT 78433409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923032874868200