Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq798 289 3e-73 seq435 286 3e-72 seq1004 259 4e-64 seq1882 107 2e-18 seq1721 102 8e-17 >seq798 Length=25304 Score = 289 bits (320), Expect = 3e-73 Identities = 553/809 (68%), Gaps = 8/809 (1%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| | ||| ||| || | ||||||| ||| ||| Sbjct 1754 TTTAGAAGTCAGCATCCAAGGTAAAAAAATTCTCTGTTAAACTTGACATCACTCCCATCC 1695 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| || | |||||||| ||| |||| || || ||||||| ||||||||| | Sbjct 1694 TCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCT 1635 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| ||||||| | || | | | | || | |||| ||||| || Sbjct 1634 CCATAAAGTCAAATGGATTTTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGCA 1578 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | ||| || |||||||| || || | || ||| ||| | || ||||| || || | Sbjct 1577 TAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATGA 1518 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 | || ||||| | || || || | || | | |||||| ||| | ||||| |||| Sbjct 1517 ACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAATTA 1458 Query 16182 TATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | | ||||||| | || | | | || || || || |||||| ||||| | |||||| Sbjct 1457 TTTATCTTACT-CTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCA 1399 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || |||||||| || || ||| Sbjct 1398 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGC 1339 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||||||||||||| | ||| Sbjct 1338 ATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCCT 1279 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccat 16420 || ||||| ||||| || || | || ||||| || || | ||| | ||||| Sbjct 1278 TCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATCCAG 1219 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 ||||| | ||| || | || ||||| ||| | || || ||||| || | | Sbjct 1218 CACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGA 1159 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | | |||| ||| |||| |||||||| || || | | |||||||||||| ||| Sbjct 1158 AATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTATACATTTCAGAA 1099 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || || || ||||| || || || || ||||| || || | ||||| | || || ||| Sbjct 1098 TGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACT 1039 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 | | ||| | || | |||||||| || ||||| ||||| | ||||||| || Sbjct 1038 TACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTGCAAAGAAA 979 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttC 16689 || || | ||| ||||| | | |||| Sbjct 978 GCCAGAACGTGGGATATAAAGTATCTTTC 950 >seq435 Length=190850796 Score = 286 bits (316), Expect = 3e-72 Identities = 540/787 (69%), Gaps = 12/787 (2%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||| || ||| ||| | | ||| ||| ||| || | ||||||| ||| ||| Sbjct 47340715 TTTACAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCC 47340656 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 | ||||| | | |||||||| |||||||| || || |||||||| | ||||||||| | Sbjct 47340655 TCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 47340596 Query 16005 CCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACA 16061 ||||||| ||||| ||||| | | || | | | | || | |||| ||||| || Sbjct 47340595 CCATAAAGTCAAATGGATTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGCA 47340539 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | ||| || || ||||| || || | || ||||||| | || ||| | || || | Sbjct 47340538 TAAGTCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAATGA 47340479 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTA 16181 || ||||| | || || || | | | | |||||| || || | || |||| Sbjct 47340478 GCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAATTA 47340419 Query 16182 TATCTCTTACTACACTATT-TAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCA 16240 | ||||||||| | || | | | || || || || ||||| ||||| | |||||| Sbjct 47340418 TTTCTCTTACT-CTCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCA 47340360 Query 16241 AAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGC 16300 |||||||| || || || || || || || || | || || |||||||| || || ||| Sbjct 47340359 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGC 47340300 Query 16301 ATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCT 16360 || ||||||||||| || | ||| ||||| | ||||| |||||||||||||| || ||| Sbjct 47340299 ATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCT 47340240 Query 16361 TCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGT--TCTAtttttactttctatcc 16418 || ||||| ||||| || || | | ||||| || || ||| ||| | | | |||| Sbjct 47340239 TCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCC--CCAATCC 47340182 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 | | ||||| ||| || | || ||||| ||| | || || ||||| || | Sbjct 47340181 AGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGA 47340122 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 | | | |||| ||| |||| || ||||| || || || | |||||||||||| | Sbjct 47340121 GAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAG 47340062 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| || || ||||| || || || || ||||| || || | ||||| | || || | Sbjct 47340061 AATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAA 47340002 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 |||| | ||| | || | |||||||| || ||||| ||||| || |||||||| | Sbjct 47340001 CTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 47339942 Query 16659 ACGCAAG 16665 | || || Sbjct 47339941 AAGCCAG 47339935 >seq1004 Length=155834243 Score = 259 bits (286), Expect = 4e-64 Identities = 523/766 (68%), Gaps = 19/766 (2%) Strand=Plus/Minus Query 15913 ATTATCTTTTTTATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAA 15972 ||| ||| || | ||||||| ||| ||| | |||| || | |||||||| ||||| Sbjct 136911653 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATGCTCGCCTACTCTCTTCTCAAA 136911594 Query 15973 GAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACA 16032 ||| || || |||||||| | ||||||||| |||||||| ||||| ||||| | | || Sbjct 136911593 GAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCT--ACT 136911536 Query 16033 ATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATA 16089 | | | | || | |||| ||||| | | ||| || || ||||| || | || Sbjct 136911535 CT-GAAAACCTTGCTAAAACCCAGTTCCAGCTTAAGTCTGTCTGCTACAAACTCAACGTA 136911477 Query 16090 CTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAA 16149 || ||||||| | || ||||| || || | || ||||| | || || || | | Sbjct 136911476 TTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAG 136911417 Query 16150 AtttttttCTATATTAACCGCTTCAATGATTAT-ATCTCTTACTACACTATT-TAACGGA 16207 | | |||||| ||| || | |||| || || ||||||| | || | | | || Sbjct 136911416 CTCCTGTTCTATCGGAACAGC---ACTGATAATTATTTCTTACT-CTCTCCTCTGATGGT 136911361 Query 16208 GGGTTTAATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTA 16267 || | || |||||| ||||| | |||||||||||||| || || || || || || Sbjct 136911360 TTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCCTCTCTG 136911301 Query 16268 CTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAAT 16327 || || | || || |||||| | || | ||||| ||||||||||| || | ||| ||| Sbjct 136911300 CTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCGTTTCTTGAGCCAGAAT 136911241 Query 16328 ATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGC 16387 || | ||||| |||||||||||||| || ||||| ||||| ||||| || || | || Sbjct 136911240 ATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGT 136911181 Query 16388 TCACCGTACGT--TCTAtttttactttctatccattttttagcccaatttgctttttgtt 16445 ||||| || || || ||| | | | ||||| ||||||| ||| || | | Sbjct 136911180 TCACCATAGGTAGCCTCTTTGTCC--CCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCT 136911123 Query 16446 tAACACAGTTCATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAA 16505 | ||||| ||| | || || ||||| || | | | | |||| || |||| | Sbjct 136911122 TGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTCCCTGGGATCTTTTA 136911063 Query 16506 TATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAA 16565 | ||||| || || || |||||||||||| ||||| || || ||||| || || || | Sbjct 136911062 TGTAAGTGTCAATGAG---ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGA 136911006 Query 16566 AACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGT 16625 | ||||| || || | ||||| | || || ||||| | ||| | || | || Sbjct 136911005 AGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCGGGT 136910946 Query 16626 TTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTG 16671 |||| || ||||| |||||||| |||||||| || || || | ||| Sbjct 136910945 TTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCAGAACGTG 136910900 >seq1882 Length=96796970 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || || ||| | | | || |||||||| | Sbjct 92373954 TTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCTGCCATAACTGCAAAAC 92373895 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 92373894 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 92373835 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 92373834 CCATAAAATCAAAAGGATTTTCTG 92373811 >seq1721 Length=108792865 Score = 102 bits (112), Expect = 8e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| |||||||||||||| || ||||| ||||| ||||| || Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 98462510 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 98462511 ACGACGCGTTCACC 98462524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462429875213000