Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq1334 1359 0.0 seq1 125 5e-24 seq4488 89.7 4e-13 >seq1334 Length=132174527 Score = 1359 bits (1506), Expect = 0.0 Identities = 1300/1658 (78%), Gaps = 40/1658 (2%) Strand=Plus/Plus Query 107135 AAGGGTCTT--AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTA 107192 ||||| ||| ||||||| ||| ||| ||||| | || | || ||| | | | | Sbjct 1922871 AAGGGGCTTGTAGGCAGGTCTTTACTAAGGATGTGGATCCAGGTCAGGCATATGTTTCT- 1922929 Query 107193 CCATCACTCTGGAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCAT 107246 ||||| | |||| | ||||| |||||| |||| ||| |||||||| |||| | Sbjct 1922930 CCATCCGTTTGGAATGGAACTGGATGTTTCTGGGAATGATTGGTTTGTAACCGGAGGCCT 1922989 Query 107247 TTTGTTCTGTCCAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCTC-CTGAT 107302 | ||||||||||||||||| || |||||| |||| ||||||| || ||| ||| | Sbjct 1922990 TCTGTTCTGTCCAAGGATCCCGTCGTCCTCCTCCTTCCCTGTGCTCAGTCTCCAGCTG-T 1923048 Query 107303 CTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTG 107362 ||||| | | ||| ||||||| |||||||| || || ||| || ||| | |||| Sbjct 1923049 CTCCCGTTCTGTGACGATGGCTCAGTGGAAGA-GA--CTCTGCTGGCAGCATTACTTGTG 1923105 Query 107363 GGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAA 107422 |||||||||||| || |||||||||||| |||| |||||| ||| || |||||||| || Sbjct 1923106 GGCCCTGGGCTGTTACATGCTGCTGGCCATTGTGGCTCTGAAACTCTCTCTCAGGTTGAA 1923165 Query 107423 ATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGA 107482 ||||| || ||||| |||||||| ||| || || || || ||| |||||||| | Sbjct 1923166 GTGTGACCCTGACCACTTGGGTCTGGAGTTCAGAGAATTTCAAAGCCAGTACTGTAGGAA 1923225 Query 107483 CATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCAC 107542 || |||||||| |||||||||||||||||| || |||||||||||||| ||| |||| Sbjct 1923226 TATCTTGTACAACTCCCTGAAGCTGCCAGCAAACAGGTCCATCAACTGTTCGGGGGTCAC 1923285 Query 107543 GCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAA 107602 ||||||||||| ||||| ||| | ||||| | || |||||||| || ||| || Sbjct 1923286 CCGAGGGGACCAAGAAGCGGTGTTGCAGGCTATTCTGAGTAACCTGGAGGTCGGGAAGAA 1923345 Query 107603 GCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAA 107662 |||| |||| ||| | ||| | ||||| | | |||||||||||||||||||| || Sbjct 1923346 GCGGGAGCCTTTCAGCGACACGCACTACCTGTCCGTCACCAGAGACTGTGAGCGCTTTAA 1923405 Query 107663 GGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGC 107722 ||| ||||||||||||||| |||||| ||||| | ||| ||| || ||||| || || Sbjct 1923406 GGCTGAAAGGAAGTTCATACCGTTCCCGCTGAGCAGAGAGGAGGCGGAGTTCCCTATCGC 1923465 Query 107723 CTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTA 107782 ||||| |||||| | |||||||||||||||||||| || |||| ||||| || ||||| Sbjct 1923466 ATACTCCATGGTGATTCATGAGAAGATTGAAAACTTCGAGAGGCTCCTGCGCGCGGTGTA 1923525 Query 107783 TGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGA 107842 ||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||| | Sbjct 1923526 TGCCCCTCAGAACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAAA 1923585 Query 107843 GGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCC 107902 ||| ||||| || || | || |||||||| || |||||||| ||||||||| |||| | Sbjct 1923586 GGCAGTCAAAGCAATGACCTCGTGCTTCCCAAACGTCTTCATAGCCAGTAAGCTGGTTCG 1923645 Query 107903 GGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCT 107962 |||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 1923646 GGTGGTTTATGCCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCT 1923705 Query 107963 CCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAA 108022 || |||||| |||| |||||| ||||| ||||||||||| ||||| ||||| || ||||| Sbjct 1923706 CCGGAGCTCCGTGCGATGGAAATACTTCCTGAATACATGTGGGACGGACTTTCCTATAAA 1923765 Query 108023 GACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTC 108082 || ||| || |||||||||| ||| |||| |||| |||| || | ||| || |||||||| Sbjct 1923766 GAGCAACGCAGAGATGGTCCAGGCTCTCAGGATGCTGAATGGGAGGAATAGCATGGAGTC 1923825 Query 108083 TGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGA 108139 ||||| ||| |||||| |||| |||| ||||||||||||| || |||| |||| ||| Sbjct 1923826 AGAGGTGCCTACTGAGTTCAAAGAAAACCGCTGGAAATACCACTTTGAGGTAGTGAGAGA 1923885 Query 108140 CACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCAC 108199 | | || || | |||| |||||| ||||||||| ||| || |||||||||| Sbjct 1923886 CCGGTTACACGTAACTGGAAAGAAGAAGGATCCTCCCCCTTTTAACGTAACCATGTTCAC 1923945 Query 108200 AGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA 108259 ||||||||| ||| ||||||| || |||| |||||||||||||| || | || ||||| Sbjct 1923946 AGGGAATGCATATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAATCCTAA 1924005 Query 108260 ATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGC 108319 ||||||| |||| |||||||||| ||||||||||| |||||||| |||||||||||||| Sbjct 1924006 ATCCCAACAACTGATTGAATGGGTAAAAGACACCTACAGCCCCGATGAACACCTCTGGGC 1924065 Query 108320 CACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACAT 108379 ||||||||||||||| | ||||||||| ||||||||||| ||||| |||||| |||| Sbjct 1924066 CACCCTTCAGCGTGCACGGTGGATGCCGGGCTCTGTTCCCCACCACCGCAAGTACGACAT 1924125 Query 108380 CTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAG 108439 ||||||||||| | | || |||||||| |||||||||||| ||||||||||| |||| Sbjct 1924126 CTCAGACATGATTTCTATTGCCAGGCTGGTCAAGTGGCAGGGTCACGAGGGAGACATCAG 1924185 Query 108440 CATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGG 108499 ||| || ||||| | || |||||||||||||| | | |||| ||||| | || || Sbjct 1924186 TCAGGGTGCCCCTTACGGCCCTTGCTCTGGAATCCACCAGCGGGCGATCTGTGTGTATGG 1924245 Query 108500 GGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCC 108559 |||||||||| || |||||||||| || ||||||||||| ||||| |||||||||||||| Sbjct 1924246 GGCCGGGGACTTGCACTGGATTCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCC 1924305 Query 108560 GAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTA 108619 | ||| || || | | || |||||||| ||||||||||| ||| ||||| || |||| Sbjct 1924306 AAAGGTAGACGACAGTGCTCTTCAGTGCTTGGAAGAGTACCTGCGTTATAAGACCTTCTA 1924365 Query 108620 TGGGACTGAACTTTGAGCTGCACTGT-------------------GGGCCAGGGACTGTG 108660 |||||||| |||||||| ||||||| |||| || | ||| Sbjct 1924366 TGGGACTGCACTTTGAGACGCACTGTGAGAGCATTGCTACCTGTGGGGCAAGAGCACGTG 1924425 Query 108661 CCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCA 108720 | |||||||| || | | |||| || | || ||||||| ||| ||||| || | |||| Sbjct 1924426 CAAACATGCCGAGAACTTGCTGGGACAGGGT-GGGTGGGAGACCAGGGCATTGCAGTCCA 1924484 Query 108721 TGGCATCCCCCAGGGTCAGAGGGCTGCTTTGATGGGGT 108758 |||||||||| ||| | || |||||||| ||| |||| Sbjct 1924485 TGGCATCCCCTAGGATAAGTGGGCTGCTATGAGAGGGT 1924522 >seq1 Length=210400635 Score = 125 bits (138), Expect = 5e-24 Identities = 568/894 (64%), Gaps = 45/894 (5%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 92328171 CCCCTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 92328112 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| || | ||| | ||| |||||||| | || || | Sbjct 92328111 ATTGAAATGCTTGACAGGCTATTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 92328052 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || |||| |||| Sbjct 92328051 CATGTGGACAAAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATTGCTTCC 92327995 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| | Sbjct 92327994 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGC 92327935 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGA 107982 | || || |||||||| ||||| ||| | ||| | || | | | || || | |||| Sbjct 92327934 CGGGTTCAGGCTGACCTCAACTGCATGAAGGACCT-CTAC-GCAATGAGGGCAAACTGGA 92327877 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||||||| | ||| || || | || ||||| || || ||||| || || ||| Sbjct 92327876 AGTACTTGATAAATCTTTGTGGTATGGATTTCCCTATTAAAACCAACCTAGAAATTGTCA 92327817 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAGT 108099 | |||||| |||||| ||| | |||| |||| | || | | || || | Sbjct 92327816 GGAAGCTCAAGTTGTTGATGGGAGAAAACAACCTGGAAACGGAGAGGATGCCATCCAA-- 92327759 Query 108100 CCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACAC 108144 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 92327758 -TAAAGAAGAAAGGTGGAAAAAACGGTATGAGGTCATTAATGGAAAGTTGACAAACACAG 92327700 Query 108145 TGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGA 108204 | || ||| || | ||||| | || | |||| | || | || | Sbjct 92327699 GG------ACTGTCAAAAT---GCTTCCTCCACTGGAAA---CACCCCTTTTTTCTGGCA 92327652 Query 108205 ATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCC 108264 |||||| ||||||| | | | | | ||| |||| || | || ||| || Sbjct 92327651 GTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAATGAAAAAATCC 92327592 Query 108265 AAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCC 108324 ||| | | || |||| ||||||| || ||||| || || | |||||||| ||| Sbjct 92327591 AAAAGTTTATGGAGTGGGCGCAAGACACATACAGCCCTGATGAGTATCTCTGGGCTACCA 92327532 Query 108325 TTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCTCA 108383 | ||| | ||| | || ||||| | || |||| || ||||| | | || Sbjct 92327531 TCCAGAGGATTCCCGAAGTCCCGGGCTCACTCTCT-GCCAGCCATAAGTACGATTTGTCT 92327473 Query 108384 GACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATG 108443 |||||| || | |||||| | ||||||||||||||| ||||| || || || | Sbjct 92327472 GACATGCACGCGGTTGCCAGGTTTGTCAAGTGGCAGTACTTTGAGGGTGACGTTTCCAAG 92327413 Query 108444 GGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCC 108503 || || || || |||||||| ||| | || | | | | ||||||| ||| || Sbjct 92327412 GGAGCTCCCTACCCACCCTGCGATGGGGTGCACGTGCGCTCGGTGTGCATTTTCGGAGCT 92327353 Query 108504 GGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 || ||| || ||||||| || | || || ||| | || || || ||||||||| Sbjct 92327352 GGTGACTTGAACTGGATGCTGCGCAAGCACCACTTGTTTGCCAATAAGTTTGAC 92327299 >seq4488 Length=2256 Score = 89.7 bits (98), Expect = 4e-13 Identities = 228/339 (67%), Gaps = 16/339 (5%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACT 107757 |||||||| | || ||||| | ||||| ||||| ||||| || | |||| | || Sbjct 1278 AAGAAGAGGTTGAATTCCCTTTGGCCTATGTCATGGTCATCCATAAGGACTTTGATACCT 1337 Query 107758 TTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATG 107817 ||||| |||| | | || | ||| || ||||| | |||||||| || ||||||| Sbjct 1338 TTGAAAGGCTCTTTAGGGCTATCTATATGCCCCAGAATGTCTACTGTGTTCATGTGGATG 1397 Query 107818 TGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCT-GCTTCCCCAAT 107876 ||| |||||| ||||| || | || | ||| ||| | | |||||| ||| Sbjct 1398 AGAAAGCCCCAGCTGAGTTCAAGGAATCTGTGA-GGCAGTTACTGAGTTGCTTCCAAAAT 1456 Query 107877 GTCTTCATGGC--CAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 | ||||| || ||| | ||| ||||||||||| ||||| | || | Sbjct 1457 GCTTTCATTGCTTCAGAGACAGAGTCT--GTGGTTTATGCAGGAATTTCCAGGCTCCAGG 1514 Query 107935 CTGACCTGAACTGTATGGAAGA-CTTG----CTCCAGAGCTCAGTGCCATGGAAGTACTT 107989 |||||||||||||| || |||| |||| |||| ||| || || ||||||||| | Sbjct 1515 CTGACCTGAACTGTCTGAAAGATCTTGTCACCTCC-GAG----GTTCCCTGGAAGTACGT 1569 Query 107990 ACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 | || || || || |||||||||| | || ||||| Sbjct 1570 CATCAACACCTGTGGACAAGACTTCCCCCTGAAAACCAA 1608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348208506508170