Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq435 302 4e-77 seq798 293 2e-74 seq1004 279 5e-70 seq1721 114 1e-20 seq2320 111 2e-19 seq699 102 8e-17 >seq435 Length=190850796 Score = 302 bits (334), Expect = 4e-77 Identities = 538/780 (69%), Gaps = 4/780 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13914 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 47340713 TACAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 47340655 Query 13915 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13974 ||||| | | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 47340654 CTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 47340595 Query 13975 CATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 14034 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 47340594 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 47340535 Query 14035 TCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 14094 ||| || || | |||||||| |||| ||||| | |||||| | || || || || Sbjct 47340534 TCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAATGAGCTT 47340475 Query 14095 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 14153 ||||| | | || | | || | |||||| | ||| | | | || || Sbjct 47340474 CACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAATTATTTC 47340415 Query 14154 TCGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 14213 || || | | || | || || | | ||| ||||| || || | || ||||||| Sbjct 47340414 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCAAAAT 47340356 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 47340355 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 47340296 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 47340295 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 47340236 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| |||| | | ||| ||| | | | | ||||| | ||||| Sbjct 47340235 CTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCAGGGCA 47340176 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 | ||| || | || || || | | || ||| |||||||| ||||| || | | || Sbjct 47340175 AGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 47340116 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 14513 || | || || | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 47340115 CCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 47340056 Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || ||||| ||||| | ||||||| || || ||| Sbjct 47340055 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTT 47339996 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | ||||| || |||| |||||||| ||||| |||||||| |||||||| || |||| Sbjct 47339995 GGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 47339936 >seq798 Length=25304 Score = 293 bits (324), Expect = 2e-74 Identities = 536/780 (69%), Gaps = 4/780 (1%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 || || ||| |||| || | ||||| ||| || | | || || || ||||| | Sbjct 1752 TAGAAGTCAGCATCCAAGGTAAAAAAATTCTCTGTTAAACTTGACATCACTCCCATCCTC 1693 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || | ||||| || ||| |||||||||| || |||| | |||| ||||| ||| Sbjct 1692 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCTCC 1633 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 14035 ||||| |||||||||||| | | || || || | |||| ||||| | | | | Sbjct 1632 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGT 1573 Query 14036 CTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 14095 || || || | |||||||| | ||| | ||| | |||||||| || || | || Sbjct 1572 CTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATGAACTTC 1513 Query 14096 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA-AT 14154 ||||| | | || | || || | |||||| | |||| || | || || || Sbjct 1512 ACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAATTATTTAT 1453 Query 14155 CGTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 14214 | || | | || | || || | | ||| ||||| || || | || |||||||| Sbjct 1452 CTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATC 1394 Query 14215 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 14274 ||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 1393 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAG 1334 Query 14275 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 14334 ||||||||| || | ||| ||||| | || || || || |||||||| | || || || Sbjct 1333 TCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCCTTCCAC 1274 Query 14335 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14394 ||||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 1273 TGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATCCAGCACAA 1214 Query 14395 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTC 14454 ||||| || | || || || | | || ||| |||||||| ||||| || | | ||| Sbjct 1213 GGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 1154 Query 14455 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 14514 | | || || | | | || || || |||||| | | |||||||||||||| ||||| Sbjct 1153 CCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTATACATTTCAGAATGTAT 1094 Query 14515 GTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT-CTG 14573 ||||||||| || || || || ||||| ||||| | ||||||| || || | ||| Sbjct 1093 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTACTG 1034 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | ||||| || |||| |||||||| ||||| |||||| | ||||||| || |||| Sbjct 1033 -GCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTGCAAAGAAAGCCA 975 >seq1004 Length=155834243 Score = 279 bits (308), Expect = 5e-70 Identities = 546/801 (68%), Gaps = 7/801 (1%) Strand=Plus/Minus Query 13862 TCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATA 13920 ||| |||| || | |||| ||| || | || | | || || || ||||| | |||| Sbjct 136911673 TCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTGATG 136911615 Query 13921 TTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAA 13980 || | ||||| || |||||||||||||| || ||||||||||| ||||| |||||||| Sbjct 136911614 CTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAA 136911555 Query 13981 ATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATC 14040 ||||||||||| | | || || || | |||| ||||| | | ||| || Sbjct 136911554 GTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCTTAAGTCTGTC 136911495 Query 14041 CGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGG 14100 || | ||||||| ||||| ||||| | |||||||| || || || || ||||| Sbjct 136911494 TGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGG 136911435 Query 14101 AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAAT 14160 | | || | | || | |||||| | ||||| | | || || || || | Sbjct 136911434 CAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCACTGATAATTATT-TCTTACT 136911376 Query 14161 AATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATG 14220 | || | || || | | ||| ||||| || || | || ||||||||||| || Sbjct 136911375 C-TCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTG 136911317 Query 14221 AAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCG 14280 | ||||| ||||| ||||||||||| || |||||| | | | ||||||| |||||| Sbjct 136911316 TAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCG 136911257 Query 14281 tttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 14340 ||| || | ||| ||||| | || || || || |||||||| || || || |||||||| Sbjct 136911256 TTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGC 136911197 Query 14341 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14400 ||| |||| | ||||| ||| | | || | ||||| | ||||| ||||| Sbjct 136911196 AAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCA 136911137 Query 14401 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTC 14460 || | || || || | | || ||| |||||||| ||||| || | | |||| | || Sbjct 136911136 ATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTC 136911077 Query 14461 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14520 | | | | ||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 136911076 CCTGGGATCTTTTATGTAAGTGTCAATGAG---ACTATACATTTCAGAATGTATGTTTTC 136911020 Query 14521 CATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAA 14580 ||| || || || || ||||| ||||| | ||||||| || || ||| | ||| Sbjct 136911019 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAA 136910960 Query 14581 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14640 || || || |||||||| ||||| ||||| || |||||||| || |||| | || Sbjct 136910959 TCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCAGAACGTG 136910900 Query 14641 TTTAATAAAGTATTGCTCTTC 14661 ||||||||| ||| || Sbjct 136910899 GGATATAAAGTATCTCTCCTC 136910879 >seq1721 Length=108792865 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 98462389 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 98462448 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 98462449 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 98462508 Query 14346 CTATTAATCGTTCTCC 14361 ||| | ||||| || Sbjct 98462509 CTACGACGCGTTCACC 98462524 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13855 CTAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTT 13913 ||| || ||| |||| || | |||| ||| || | || | | || || || ||||| Sbjct 98460563 CTAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCC 98460621 Query 13914 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13973 | ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| | Sbjct 98460622 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 98460681 Query 13974 CCATAAAATCAAATGGATT 13992 ||||||| ||||||||||| Sbjct 98460682 CCATAAAGTCAAATGGATT 98460700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 ||||| || |||||||| | |||||||||||||| || ||||||||||| || || || Sbjct 98464469 ATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTGG 98464528 Query 14534 AAACCATAAAAACATCTAGCTTCTG 14558 || ||||| ||||| | ||||||| Sbjct 98464529 AAGCCATAGAAACAGCGGGCTTCTG 98464553 >seq2320 Length=142054208 Score = 111 bits (122), Expect = 2e-19 Identities = 277/417 (66%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 14225 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 14284 |||||||| || |||||||| || || |||||||| | || | ||||| || | |||| Sbjct 131601589 CCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTGTTTC 131601530 Query 14285 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14344 || | ||| ||||| || || || || || |||| | || || ||| ||||| Sbjct 131601529 TTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGCAAAG 131601470 Query 14345 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14404 ||| | |||||||| | || | ||||||| ||||| ||||| || Sbjct 131601469 GCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACACAAGGCCCAATCT 131601410 Query 14405 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTA 14464 | | || || | | || ||| ||||||| ||||| || | | |||| | ||||| Sbjct 131601409 GCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTG 131601350 Query 14465 GTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14523 | ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||| Sbjct 131601349 TTGTCTTTAAC---ATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTTTCCAT 131601293 Query 14524 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCT 14583 ||| || || || ||||| || || | ||||| || || ||| | |||| Sbjct 131601292 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATTG 131601236 Query 14584 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14638 || |||| ||||||| |||||| ||||||| ||| |||| || | | |||||| Sbjct 131601235 CTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATATG 131601179 >seq699 Length=159171411 Score = 102 bits (112), Expect = 8e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 14483 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14542 |||||||| | | ||| |||||||| |||||||||||||| || || || || ||||| Sbjct 59756731 TCAATAAGGAGACCATATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAG 59756672 Query 14543 AAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTA 14602 ||||| | ||||||| || || ||| | ||||| || |||| |||||||| Sbjct 59756671 AAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 59756612 Query 14603 ACTATACCATCACTAGCTGCAAAAAATGCCA 14633 |||| |||||||| ||||||| || |||| Sbjct 59756611 ACTACGCCATCACTCACTGCAAAGAAAGCCA 59756581 Score = 102 bits (112), Expect = 8e-17 Identities = 121/162 (75%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 14474 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGA 14533 || || || |||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 59758648 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 59758589 Query 14534 AAACCATAAAAACATCTAGCTTCTGACCATTGTACC--TCTGAGTAAAATCTTTCGGCCA 14591 || ||||| ||||| ||||||| || ||| | || | |||| || ||| Sbjct 59758588 AAGCCATAGAAACAGTGGGCTTCTG-TAATCTGACCTTTTTGGGCTAAATTGCTCCACCA 59758530 Query 14592 AATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | |||||||| |||| |||||||| |||||||| || |||| Sbjct 59758529 AGTTTTCATTTACTACGCCATCACTTGCTGCAAAGAAAGCCA 59758488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482259953509400