Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq9075 82.4 6e-11 seq2320 82.4 6e-11 seq1441 82.4 6e-11 seq1195 82.4 6e-11 seq699 82.4 6e-11 >seq9075 Length=2552 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| || ||| | Sbjct 2254 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACCCTCG 2313 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 2314 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 2373 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||| |||||||||||| ||| || || |||| | Sbjct 2374 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 2433 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 2434 ATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 2481 >seq2320 Length=142054208 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| | ||| | Sbjct 106998307 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGCTGAACCCTCG 106998366 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 106998367 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 106998426 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATG-ACTATGAACGATTACAG 25010 ||| | | || | ||| ||||| ||||||||||| | ||| ||| || || |||| Sbjct 106998427 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGGATGTACTTTGTCTGACTACAA 106998485 Query 25011 CATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 106998486 CATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 106998534 >seq1441 Length=130397257 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| || ||| | Sbjct 28400796 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACCCTCG 28400855 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 28400856 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 28400915 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||| |||||||||||| ||| || || |||| | Sbjct 28400916 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 28400975 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 28400976 ATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 28401023 >seq1195 Length=124281992 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| || ||| | Sbjct 101827835 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACCCTCT 101827776 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 101827775 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 101827716 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||| |||||||||||| ||| || || |||| | Sbjct 101827715 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 101827656 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 101827655 ATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 101827608 >seq699 Length=159171411 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| || ||| | Sbjct 642996 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACCCTCG 642937 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 642936 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 642877 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||| |||||||||||| ||| || || |||| | Sbjct 642876 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 642817 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 642816 ATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 642769 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| || || |||||| | || || ||||| || ||| |||| || ||| | Sbjct 94894671 ATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACCCTCG 94894730 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 || | |||||| ||| |||| || || | || ||||| | || ||| ||| Sbjct 94894731 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 94894790 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGATTCCATGACTATGAACGATTACAGC 25011 ||| | | || | ||| ||||| |||||||||||| ||| || || |||| | Sbjct 94894791 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 94894850 Query 25012 ATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || ||||| ||| | || |||||| | ||||| || | || || ||| Sbjct 94894851 ATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGT 94894898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418231581773600