Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq435 132 1e-25 seq798 131 3e-25 seq1004 111 3e-19 seq1721 89.7 1e-12 >seq435 Length=190850796 Score = 132 bits (146), Expect = 1e-25 Identities = 294/438 (67%), Gaps = 5/438 (1%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 47340220 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 47340279 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | || ||||| | ||| || || Sbjct 47340280 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 47340339 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | || ||||| ||| || |||| ||| || | || | | ||| Sbjct 47340340 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACAG---CTAGTACACAAACCA 47340396 Query 102098 TCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTC 102157 ||| || || | ||||| | | | || | || || ||||| || | ||| Sbjct 47340397 TCAGAGGAGAGAGTAAGAGAAATAATTATCAATGCTATTCGGATAGAACAGGAGCTCCTC 47340456 Query 102158 ACAGTTTCCCTGCCTGTTAA-ATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 || | || ||||||| || | | |||||| ||| |||| | |||| || | ||| Sbjct 47340457 ACTGAGGCCTTGCCTGTGAAGCTCATTGGGAA-GAATTGCACTCTAATGAAGCAATGCAT 47340515 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||| ||||| ||||| | ||| || | ||| |||| | ||| | | || Sbjct 47340516 TGAGTTTGTAGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGA 47340575 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 || || || || ||||| |||||||| || || ||||| ||||| ||||| || Sbjct 47340576 GAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAA 47340635 Query 102337 GAGAGTCGCCGAGTATCA 102354 |||||| | | ||||||| Sbjct 47340636 GAGAGTAGGCAAGTATCA 47340653 >seq798 Length=25304 Score = 131 bits (144), Expect = 3e-25 Identities = 296/440 (67%), Gaps = 9/440 (2%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| |||||||| |||| | || |||||||| |||||| Sbjct 1259 GTAGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 1318 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||||| ||||| | || ||||| | ||| || || Sbjct 1319 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGAT 1378 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | || ||||| ||| || |||| ||| | | || | | ||| Sbjct 1379 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACA---CCTAGTACACAAACCA 1435 Query 102098 TC--AAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTC 102155 || | |||| || | | |||| | | ||| | || | || ||||| || || | Sbjct 1436 TCAGAGGAGAGAGTAAGAT--AAATAATTATTGATTCTGTTTGGATAGAACAGGAGTTCC 1493 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 |||| | || ||||||| || || | || ||||| |||| | | || || ||| Sbjct 1494 TCACTGAGGCCTTGCCTGTGAAGTTCATTGGGATGAATTGCACTCTAAGGAAGCAACACA 1553 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||| ||||||||||| | ||| || | ||| |||| | ||| | | || Sbjct 1554 TTGAGTTTGTGGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAG 1613 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTC-CCTCGAGAATAAGACCAACTTTTTTGAA 102334 || || || || ||||| |||||||| | | || | ||||| ||||| | ||| Sbjct 1614 AAAATCCATTTGACTTTATGGAGAATATTTCACAGCAAGGA-AAGACTAACTTCTCTGAG 1672 Query 102335 AAGAGAGTCGCCGAGTATCA 102354 |||||||| | ||||||||| Sbjct 1673 AAGAGAGTAGGCGAGTATCA 1692 >seq1004 Length=155834243 Score = 111 bits (122), Expect = 3e-19 Identities = 291/443 (66%), Gaps = 17/443 (4%) Strand=Plus/Plus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 136911188 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 136911247 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | || | ||||| | |||| | || ||||| | ||| || || Sbjct 136911248 CTCAAGAAACGAGGACTGATGCCTAGCCTCATATTTTCTAATGAACTTATTAGCAGAGAG 136911307 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||| | || | || ||||| ||| || |||| ||| | | | | | ||| Sbjct 136911308 GAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACA---CCTAGGACACAAACCA 136911364 Query 102098 TCA------AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| ||| | | |||| ||| | || || | || ||||| || Sbjct 136911365 TCAGAGGAGAGAGTAAGAAAT-----AATTATCAGT---GCTGTTCCGATAGAACAGGAG 136911416 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | ||||| | || ||||||| || | | || ||||| |||| | |||| || Sbjct 136911417 CTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGCACTCTAATGAAGCAA 136911476 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 ||| |||| ||||| ||||| | ||| | | ||| |||| | ||| | | Sbjct 136911477 TACGTTGAGTTTGTAGCAGACAGACTTAAGCTGGAACTGGGTTTTAGCAAGGTTTTCAGA 136911536 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 || || || || || ||||| |||||||| || || ||||| ||||| ||| Sbjct 136911537 GTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTTCTTT 136911596 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || |||||||| | |||| |||| Sbjct 136911597 GAGAAGAGAGTAGGCGAGCATCA 136911619 >seq1721 Length=108792865 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 || |||||||||||||| ||||| ||||||||| |||| | || |||||||| |||||| Sbjct 98462512 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 98462453 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGA 102021 ||||||| | || | ||||||| ||||| | || ||||| Sbjct 98462452 CTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGA 98462409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989403894165775