Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq435 315 7e-81 seq798 306 3e-78 seq1004 286 3e-72 seq1721 120 3e-22 seq1882 111 1e-19 seq699 91.5 1e-13 seq1441 87.8 2e-12 >seq435 Length=190850796 Score = 315 bits (348), Expect = 7e-81 Identities = 627/918 (68%), Gaps = 28/918 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | ||||| | | |||| || | || | Sbjct 47340687 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATACTTGCCTACTC-TCTTCTCAA 47340629 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 47340628 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 47340569 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| || || | |||| | || | | ||| ||||| || || || || | | Sbjct 47340568 TGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCTACAAACTCAATGCATT 47340509 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||| | |||||| | || || || | ||| || | || | || | | || Sbjct 47340508 GCTTCATTAGAGTGCAATTCTTCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCT 47340449 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGGAT 11606 ||| |||||| || |||| || ||||| ||| |||| |||||| | Sbjct 47340448 CCTGTTCTATCCGAATAGCATTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGT 47340389 Query 11607 GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTA 11666 ||| || ||||| ||||| | || ||||||||||| |||||||| || ||||| || | Sbjct 47340388 GTACTAGCTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAA 47340329 Query 11667 TTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAG 11726 | ||||||||||||||||| | || ||||||| ||||||||| || | ||| ||||| | Sbjct 47340328 TAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGG 47340269 Query 11727 CAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTC 11786 ||||| |||||||||||||| || || ||||| || ||||| ||||| || | ||| | Sbjct 47340268 ATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACCTTCAC 47340209 Query 11787 CATA--TA----CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTA 11840 |||| || | |||| | | ||||| || |||||| || ||||| || | Sbjct 47340208 CATAGGTAGTCTCTTTGTCCCCA---ATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGA 47340152 Query 11841 CGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTAC 11898 | || ||| ||||| || || || | | |||| | |||| | |||| ||| Sbjct 47340151 CACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCGTTGGGATCTTTTAT 47340094 Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 || || || || | | |||||||||||| ||||| || |||||||| || ||||| || Sbjct 47340093 GTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAA 47340034 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||||||||| | || |||| | ||| || || ||||| ||| | || || Sbjct 47340033 GCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTTGGCTAAATCACTCCACCAAGTT 47339974 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || |||||||| | |||||| || || || | ||| |||||||||| | Sbjct 47339973 TTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACATGGGATATAAAGTATCT 47339914 Query 12079 ----TTCGTCTTTAGTTAATTTATCCCAATCATCTAAA--TCTTTTGATAAATCTACTTC 12132 | || ||| || | ||||| | | ||| || || || | || || || Sbjct 47339913 CTCCTCCGGCTTCAGGGA----TTCCCAGT--GCCAAATGTCCTTGGACAGGTCCACCTC 47339860 Query 12133 TTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTT 12192 | ||||||| || ||| | | | |||||||| | ||||||||| || |||| Sbjct 47339859 CT-GGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACATCTGCCAGATATCGTGGTACTC 47339801 Query 12193 AATAGGGAAAATAACGAA 12210 || |||||||| || || Sbjct 47339800 CATGGGGAAAATGACAAA 47339783 >seq798 Length=25304 Score = 306 bits (338), Expect = 3e-78 Identities = 547/792 (69%), Gaps = 15/792 (2%) Strand=Plus/Minus Query 11302 AAATATATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCG 11361 ||| | ||||||| | | ||| | ||| |||||| | ||||| || | |||| || Sbjct 1732 AAAAAAATTCTCTGTTAAACTTGACATCACTCCCATCCTCTGATACTCGCCTACTC-TCT 1674 Query 11362 T-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTAT 11420 | || | || |||||||| |||| |||| |||| |||||||||| ||| ||||| | Sbjct 1673 TCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCTCCATAAAGTCAAATGGATTTT 1614 Query 11421 ATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTA 11480 ||| |||| || || | |||| | || | | ||| ||||| || || || | Sbjct 1613 CTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAA 1554 Query 11481 TATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCA 11540 | | || | ||| | |||||||| || || | | ||| || | || | || | Sbjct 1553 TGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATGAACTTCACAGGCAAGGCCTCAGTGA 1494 Query 11541 AAAACTCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATG 11600 ||||||| |||||| ||| | |||||| ||||| | ||| |||| |||| Sbjct 1493 GGAACTCCTGTTCTATCCAAACAGAATCAATAATTATTTATCTTACTCTCTCCTCTGATG 1434 Query 11601 GTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTC 11660 || |||| || ||||| ||||| | || ||||||||||| |||||||| || |||| Sbjct 1433 GTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTC 1374 Query 11661 TACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAA 11720 | || || ||||||||||||||||| | || ||||||| ||||||||| || | ||| | Sbjct 1373 TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGA 1314 Query 11721 ATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTC 11780 |||| | ||||| |||||||||||||| | || ||||| || ||||| ||||| || | Sbjct 1313 ATATGGATGCAAAAGAACCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCTACGACGC 1254 Query 11781 TTTCTCCATA--TA----CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCT 11834 ||| ||||| || | |||| | | ||||| |||||| || || |||| Sbjct 1253 GTTCACCATAGGTAGCGTCTTTGTCCCCA---ATCCAGCACAAGGCCCAGTCTGCCTTCT 1197 Query 11835 TTTTTACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATC 11892 | || || || ||| ||||| || || || | | |||| | |||| | ||| Sbjct 1196 TCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCGTTGGGATC 1139 Query 11893 TCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTAT 11952 | ||| ||| || || || | |||||||||||| ||||| || |||||||| || || Sbjct 1138 TTTTATATAAGTGTCAATACGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAAT 1079 Query 11953 TTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGC 12012 ||| || ||||||||||| || || |||| ||| || | | ||||| ||| | Sbjct 1078 TTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTACTGGCTAAATCGCTCCAC 1019 Query 12013 TAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAA 12072 || || |||||||| || |||||| | |||||| || || || | || |||||| Sbjct 1018 CAAGTTTTCATTTACTATGCCATCATTCACTGCAAAGAAAGCCAGAACGTGGGATATAAA 959 Query 12073 GTATTTTTCGTC 12084 |||| |||| || Sbjct 958 GTATCTTTCCTC 947 >seq1004 Length=155834243 Score = 286 bits (316), Expect = 3e-72 Identities = 542/787 (69%), Gaps = 22/787 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | | ||| | ||| |||||| | |||| || | |||| || | || | Sbjct 136911653 ATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATGCTCGCCTACTC-TCTTCTCAA 136911595 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||| ||||| |||| |||||||||| ||| ||||| | ||| Sbjct 136911594 AGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTC 136911535 Query 11427 TGAAGACTTTTTCACAACCTAACTCT-GTTAATAATCTATCTGCGACGAATTCTATATAC 11485 |||| || || | |||| | || | | | | ||| ||||| || || || | || Sbjct 136911534 TGAAAACCTTGCTAAAACCCAGTTCCAGCTTA-AGTCTGTCTGCTACAAACTCAACGTAT 136911476 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 || ||||| | |||||||| || || || | ||| || | || | || | | | Sbjct 136911475 TGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGC 136911416 Query 11546 TCCTTTTCTATATTAACCGCATCAATGATTATCGACGTTATAACT---TCCTTAGATGGT 11602 |||| |||||| ||| ||| || ||||| || | ||| |||| |||||| Sbjct 136911415 TCCTGTTCTATCGGAACAGCACTGATAATTAT-----TTCTTACTCTCTCCTCTGATGGT 136911361 Query 11603 GGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTA 11662 ||| || ||||| ||||| | || ||||||||||| |||||||| || ||||| Sbjct 136911360 TTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCCTCTCTG 136911301 Query 11663 CTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAAT 11722 || || ||||||||||||||| | | | ||||||| ||||||||| || | ||| ||| Sbjct 136911300 CTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCGTTTCTTGAGCCAGAAT 136911241 Query 11723 ATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTT 11782 || | ||||| |||||||||||||| || || ||||| || ||||| ||||| || | | Sbjct 136911240 ATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGT 136911181 Query 11783 TCTCCATA--TA-CCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTT 11839 || ||||| || ||| ||| ||||| ||||||||| || ||||| || Sbjct 136911180 TCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTG 136911121 Query 11840 ACGCATTCCATTGTTTCTATAGCGTT--AAATAAATGCATTTTTTCTATATTATCTCTTA 11897 || || ||| ||||| || || || | | |||| | |||| | |||| ||| Sbjct 136911120 ACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC--CCTTTCCCTGGGATCTTTTA 136911063 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 || || || || | |||||||||||| ||||| || |||||||| || ||||| | Sbjct 136911062 TGTAAGTGTCAAT---GAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGA 136911006 Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017 | ||||||||||| || || |||| ||| || || ||||| ||| | | Sbjct 136911005 AGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCGGGT 136910946 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077 | ||||| || || ||||| || | |||||| || || || | || |||||||||| Sbjct 136910945 TTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATC 136910886 Query 12078 TTTCGTC 12084 | || || Sbjct 136910885 TCTCCTC 136910879 >seq1721 Length=108792865 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || ||||| || || ||||||||||||||||| | || ||||||| ||||||||| || Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| || || ||||| || ||||| ||| Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 98462510 Query 11774 ACTACTCTTTCTCC 11787 || || | ||| || Sbjct 98462511 ACGACGCGTTCACC 98462524 >seq1882 Length=96796970 Score = 111 bits (122), Expect = 1e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| ||||| || || |||||||| ||||| || | ||| ||||| | |||| |||| Sbjct 92365323 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTTT 92365264 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 ||| ||| |||||||||||||| || || || ||||| | ||| || ||||| || || | Sbjct 92365263 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 92365204 Query 11772 CTACTACTCTTTCTCC 11787 | || |||||||| || Sbjct 92365203 CCACCACTCTTTCCCC 92365188 >seq699 Length=159171411 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 11890 ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGC 11949 |||| ||| ||| | || || | | || ||| ||||| ||||| || |||||||| || Sbjct 59756747 ATCTTTTATATAAATGTCAATAAGGAGACCATATATTTCAGAATGTATGTTTTCCATGGC 59756688 Query 11950 TATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTC 12009 ||||| || ||||||||||| || || |||| | ||| || || ||||| || Sbjct 59756687 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 59756628 Query 12010 CGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 | | || || |||||||| | |||||||| |||||| || || || | || ||| Sbjct 59756627 CACCAAGTTTTCATTTACTACGCCATCACTCACTGCAAAGAAAGCCAGAACGTGGGATAT 59756568 Query 12070 AAAGTATTTTTCGTC 12084 |||| || | || || Sbjct 59756567 AAAGCATCTCTCCTC 59756553 >seq1441 Length=130397257 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || ||||| || || |||||||| Sbjct 67490808 ACCTGAAATTCTCCTGACAACACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATA 67490749 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || || |||||||| || || || || | Sbjct 67490748 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 67490689 Query 37258 CTATTTCTCAATCCAT 37273 || ||||| | |||| Sbjct 67490688 CTGTTTCTTATACCAT 67490673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468441607565200