Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1644 143 2e-29 seq2147 131 1e-25 >seq1644 Length=117903854 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 |||||||||||| ||| ||||||| || || || |||||||||||||||||||| || | Sbjct 57521653 TCAGGCCCGTGATGTGCGCGATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAG 57521712 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | || |||||||||||||||||||||||||| || Sbjct 57521713 GCACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACCGTTCA 57521772 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 |||| || ||||| || | | || || ||||| || |||||| Sbjct 57521773 CCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGCGCCATC 57521816 >seq2147 Length=50472720 Score = 131 bits (144), Expect = 1e-25 Identities = 198/282 (70%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 2963 TTAAACGCATCGTCTAGCGTTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAAT 3022 || || ||||| || || |||| || ||||| || ||||| || || ||||| | | | Sbjct 4191994 TTTAATGCATCATCCAGACTTCTGGCAAGAAAATGAGCTCCTTGTGGAGGTTCCTGGAGT 4191935 Query 3023 TCTCTGCTCAAAATAATATTAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAA 3082 ||||| || | || | ||||||||| | | | ||| || ||||| ||||| ||||| Sbjct 4191934 TCTCTACTGAGAACGAAATTAATTCTATCCTTTAAAGGTCGATTCTTCTCAGGAATGGAG 4191875 Query 3083 AACCATGTTCTTTTCCCCATAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGAC 3142 ||||| || | | |||||||| |||| ||||| || |||| | | ||| | || | Sbjct 4191874 AACCAGGTCTTCCTACCCATAATCACCAGATTCTGTTTACCTTCTATCGAGGAGGTTGTG 4191815 Query 3143 GTCATTTTCTGAAAATACATCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTT 3202 |||||| |||| |||||| | | ||| ||||| || |||||| |||| || || Sbjct 4191814 GTCATTCTCTGGAAATACCTGAATTCATTTCTGAGTGGCGGCCAGGGCAGGTCCCCCTTC 4191755 Query 3203 TTACCAATTCCTAATTGTTCATCAACTGCAACGATGCAGTTA 3244 || || || || | | || ||||| |||||||||||| Sbjct 4191754 TTGCCGATACCCATGTTTTGGGACACTGCGACGATGCAGTTA 4191713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427701941948400