Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq798 140 2e-28 seq435 125 5e-24 seq1004 120 2e-22 >seq798 Length=25304 Score = 140 bits (154), Expect = 2e-28 Identities = 396/594 (67%), Gaps = 37/594 (6%) Strand=Plus/Plus Query 22344 CATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGA 22403 |||||| ||||||| | || || || ||||||| ||||||||||| || || | || Sbjct 863 CATGTA--AGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCT--GTCCAGA 918 Query 22404 TGTACGCCATTGGACAGAAAAACTGACCGAGGCTGAGCGCAGGTTC---ATGTCTCACAT 22460 | | || ||| ||| |||| || | ||| || | | || || ||| | Sbjct 919 CATTCAGCACTGG---GAATCCCTGA---AGCCCGAGGAAAGATACTTTATATCCCACGT 972 Query 22461 ACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCG 22519 ||||| ||||||||| || |||||||| ||| || ||| | ||| || |||| | Sbjct 973 TCTGGCTTTCTTTGCAGTGAATGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAG 1032 Query 22520 CAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGG 22579 | | || || | || |||||||| | ||||||||| || || | || |||| Sbjct 1033 CCAGT-AAGTTCAG---ATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGG 1088 Query 22580 AAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG---A 22636 |||| |||||| |||||||||||| || | ||| ||| | || ||||| | Sbjct 1089 AAAACATACATTCTGAAATGTATAGTCTCCGTATTGACACTTATATA---AAAGATCCCA 1145 Query 22637 ATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGCAC 22693 | || | ||| | |||| || |||| ||||| ||||| || |||||| Sbjct 1146 ACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAG 1205 Query 22694 AGTGGGCTGCACAATGGCTGAAT--GCCACACATAAGT---CTATCGCAACACGTCTCTT 22748 | ||||| | |||| || | ||| | | | |||| | | ||| || | Sbjct 1206 ACTGGGC----CTTGTGCTGGATTGGGGACAAAGACGCTACCTATGGTGA-ACGCGTCGT 1260 Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 |||||||| || || ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 1261 AGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCT 1320 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | | ||||| || || | |||||| | || || Sbjct 1321 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGA 1380 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| |||||||||| |||||||| || |||| | || | | | ||||||| Sbjct 1381 GGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACACCTAGTACACAAACC 1434 >seq435 Length=190850796 Score = 125 bits (138), Expect = 5e-24 Identities = 320/474 (68%), Gaps = 26/474 (5%) Strand=Plus/Plus Query 22462 CTGGCATTCTTTGCAATGGCA---GATGGCATTGTAGGCGACAACCTTGTGT-GCAATTT 22517 ||||| ||||||||| ||| |||||||| ||| || ||| | ||| | |||| Sbjct 47339935 CTGGCTTTCTTTGCA---GCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGTGATTT 47339991 Query 22518 CGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAAT 22577 || || ||| || | ||| |||||||| | ||||||||| || || | || || Sbjct 47339992 AGCCAA-GAAGTTCAG---ATTACAGAAGCCTGCTGTTTCTATGGCTTCCAAATTGCCAT 47340047 Query 22578 GGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTAGTAGCTAAAGAG-- 22635 |||||| |||||| |||||||||||| || || ||| ||| | || ||||| Sbjct 47340048 GGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATA---AAAGATCC 47340104 Query 22636 -AATCAAGCCGCATTGTT-TTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 || || | ||| | |||| || |||| ||||| ||||| || || || Sbjct 47340105 CAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAATGC 47340164 Query 22692 ACAGTGGGC--TGCACAATGGCTGAATGCCACACATAAGTC-TATCGCAACACGTCTCTT 22748 | | ||| | ||| | ||| | | || | | | | ||| | | | || || | Sbjct 47340165 AGATTGGACCTTGCCC--TGGATTGGGGACAAAGAGACTACCTATGGTGA-AGGTGTCGT 47340221 Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 |||||||| || || |||||| || | |||||||| || ||||| ||||||||||||| Sbjct 47340222 AGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCT 47340281 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | | ||||| || || | |||||| | || || Sbjct 47340282 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGA 47340341 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 ||| |||||||||| |||||||| || |||| | || | | | ||||||| Sbjct 47340342 GGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACAGCTAGTACACAAACC 47340395 >seq1004 Length=155834243 Score = 120 bits (132), Expect = 2e-22 Identities = 328/494 (66%), Gaps = 39/494 (8%) Strand=Plus/Plus Query 22447 TTCATGTCTCACATACTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTT 22506 || || || ||| | ||||| ||||||||| | |||||||| || || |||| Sbjct 136910891 TTTATATCCCACGTTCTGGCTTTCTTTGCAGCGAGCGATGGCATAGTGAATGAAAACCCG 136910950 Query 22507 GTGT-GCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTT 22565 ||| || |||| || || ||| || | || |||||||| | ||||||||| || Sbjct 136910951 GTGGAGCGATTTAGCCAA-GAAGTTCAG---ATCACAGAAGCCCGCTGTTTCTATGGCTT 136911006 Query 22566 TCAGGTGGCAATGGAAAATATACATGCTGAAATGTATA--CTCAGCTGATTATCACATTA 22623 || | || |||||||| |||||| |||||||||||| |||| ||| | |||| | Sbjct 136911007 CCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCAT-TGACACTTACATAA 136911065 Query 22624 GT------AGCTAAAGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCAT 22675 || |||| |||| || | |||| || |||| ||||| | Sbjct 136911066 AAGATCCCAGGGAAAGGGAAT---------TTCTCTTCAATGCCATTGAAACGATGCCTT 136911116 Query 22676 GTGTTAAAGCCAAGGCACAGTGGGC--TGCACAATGGCTGAAT--GCCACACATAAGT-- 22729 |||| || |||||| | ||||| ||| |||| || | ||| | | | Sbjct 136911117 GTGTCAAGAAGAAGGCAGATTGGGCCTTGC------GCTGGATTGGGGACAAAGAGGCTA 136911170 Query 22730 -CTATCGCAACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCA 22788 |||| | | ||| || | |||||||| || || |||||| || | |||||||| || Sbjct 136911171 CCTATGGTGA-ACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCT 136911229 Query 22789 TTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAAC 22848 ||||| ||||||||||||| |||||||| || ||||| | | ||||| || Sbjct 136911230 TTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTAGCCTCATATTTTCTAAT 136911289 Query 22849 GAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAA 22908 || | |||||| | || || ||| |||||||||| |||||||| || |||| | || Sbjct 136911290 GAACTTATTAGCAGAGAGGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTCAAACAC 136911349 Query 22909 ATGGCAAACAAACC 22922 | | | ||||||| Sbjct 136911350 CTAGGACACAAACC 136911363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356171927614615