Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq699 104 2e-17 seq1195 100 3e-16 seq435 86.0 6e-12 seq848 84.2 2e-11 seq1820 82.4 8e-11 >seq699 Length=159171411 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||||| || | ||| | || |||||||| || ||||| ||||| | |||| Sbjct 77802683 ACGCAGGACCAGGTGCAAGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCC 77802742 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||||| ||||| || || ||| |||| || | ||||| ||||| || ||||||||||| Sbjct 77802743 ATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTT 77802802 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| || || | | ||| | ||||| | ||||||||||| | ||| | Sbjct 77802803 ATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTGAT 77802862 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||||||||||| || || ||||| || |||||| Sbjct 77802863 GGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 77802899 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||||| | ||||| || | ||| | || |||||||| || || || || || Sbjct 77803128 CCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAA 77803187 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 77803188 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 77803247 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||||||||| || ||| || || | | ||| | ||||| | ||||||||| Sbjct 77803248 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACC 77803307 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||||||||||| || || ||||| || ||||| Sbjct 77803308 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803354 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| | ||||| || | ||| | || |||||||| || || || || || Sbjct 77802900 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAA 77802959 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || || ||| |||| || | ||||| ||||| || Sbjct 77802960 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 77803019 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| || || ||| || || | | ||| | ||||| | |||||||| Sbjct 77803020 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACT 77803079 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | ||||||||||||| || || ||||| || |||||| Sbjct 77803080 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 77803127 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||||||| |||||| |||||||||| ||||| || || || ||||| || ||| Sbjct 10714255 TCCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTG 10714196 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| |||| | ||| | | || || |||| ||||||||||||||| ||| Sbjct 10714195 TCT-TGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGGT 10714137 Query 139729 CGTCTTGCC 139737 |||||||| Sbjct 10714136 GGTCTTGCC 10714128 >seq1195 Length=124281992 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | ||| | |||| ||||||||||| || ||||| || || Sbjct 115889083 GCCACCTCGGAGACGGAGAACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889142 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 115889143 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889202 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || || || ||||| ||| || || | | || | ||||| ||||||| || Sbjct 115889203 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 115889262 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || |||| || || ||||| || ||||| Sbjct 115889263 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 115889310 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| | || | ||| | || |||||||| |||||||| || || Sbjct 115889311 GCCACCTCTGAGACGGAGGACGAGGTGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGA 115889370 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 115889371 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889430 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || ||||| ||| || || | | || | ||||| ||||||| || Sbjct 115889431 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCGAC 115889490 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||||||||||| || || ||||| || ||||| Sbjct 115889491 TTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 115889538 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | ||| | || | |||| ||||||||||| || ||||| || || Sbjct 115889539 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889598 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| | ||||| ||||| || || ||| |||||| | ||||| || ||||| Sbjct 115889599 GAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889658 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | || | ||||| ||||||| || Sbjct 115889659 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 115889718 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | ||||| || |||| || || ||||| || ||||| Sbjct 115889719 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 115889766 >seq435 Length=190850796 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| ||||| | |||| || | ||| | || |||||||| || ||||| || || Sbjct 151101929 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 151101988 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| || || |||||||| || ||| | |||||| | ||||| || || || Sbjct 151101989 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 151102048 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTG-TGTCGGTGGGCTCCA 139715 || || || ||||| ||| |||| | ||| | | || || |||| ||||||||| Sbjct 151102049 GATACCCTCCTTGTCT-TGAATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCCA 151102107 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | |||||| | || | || || || || || ||||| Sbjct 151102108 CCTCAAGGGTGATGGTCTTGGCCGTGAGGGTCTTCACAAAGATCTGCAT 151102156 >seq848 Length=158406734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| || || || || ||| |||| || | |||||||| | | ||||||||||| Sbjct 147046635 TCTTCCAGTTGCTTGCCTGCAAAGATGAGCCTCTGCTGATCAGTGGAGATGCCTTCTTTA 147046576 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || ||| | | ||||| ||||| ||||||||||||| | ||| | Sbjct 147046575 TCCTGGATCTTGGCTTTCACATTTTCCATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 147046516 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTT 139760 |||||||| | ||| || || | |||||||| Sbjct 147046515 GTCTTGCCAGCCAAGGTCTTCAAGAATATTT 147046485 >seq1820 Length=98464013 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| |||||||| |||| | | |||| | || || || ||||| |||||||| ||| Sbjct 6886304 TCTTCCAGCTGTTTCCCAGAAAAAATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTG 6886363 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| ||| || | | || | ||||| ||||||| ||||||| ||| | Sbjct 6886364 TCCTGGATATTTGCCTTGACTTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 6886423 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGC 139767 ||||||||||||| || || || || | ||||| || Sbjct 6886424 GTCTTGCCGGTCAGAGTCTTCACAAAGACCTGCATTGC 6886461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495975917636000