Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq435 309 3e-79 seq798 304 1e-77 seq1004 288 9e-73 seq2320 120 3e-22 seq1721 120 3e-22 seq699 93.3 4e-14 >seq435 Length=190850796 Score = 309 bits (342), Expect = 3e-79 Identities = 540/782 (69%), Gaps = 8/782 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 47340713 TACAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 47340655 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| | | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 47340654 CTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 47340595 Query 13643 CATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAA 13702 |||||| ||||||||||| | | || || || | |||| ||||| | | | Sbjct 47340594 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 47340535 Query 13703 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13762 ||| || || | ||||||||| |||| ||||| | |||||| | || || || || Sbjct 47340534 TCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAATGAGCTT 47340475 Query 13763 TACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAAT 13822 ||||| | | || | | || | |||||| | ||| | | ||||| || Sbjct 47340474 CACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCAT---TGATAATTAT 47340418 Query 13823 TGTAATAA---TCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAA 13879 | | | |||| | || || | | ||| ||||| || || | || ||||| Sbjct 47340417 TTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCAAA 47340358 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||||| || | ||||||||||| ||||||||||| || |||||||| | || ||||| Sbjct 47340357 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCAT 47340298 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 || ||||||||| || | ||| ||||| | ||||| || || |||||||| || || || Sbjct 47340297 CAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTC 47340238 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||||||||||| |||| | | ||| ||| | | | | ||||| | ||||| Sbjct 47340237 CACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCAGGG 47340178 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 | ||| || | || || || | | || ||| |||||||| ||||| || | | | Sbjct 47340177 CAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAA 47340118 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| | || || | | | ||||| || |||||||| | |||||||||||||| || Sbjct 47340117 TTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATG 47340058 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 |||||||||||| || || || || ||||| || || | ||||| | || ||||| Sbjct 47340057 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTC 47339998 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | ||||| || |||| |||||||| ||||| |||||||| |||||||| || || Sbjct 47339997 TTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGC 47339938 Query 14300 CA 14301 || Sbjct 47339937 CA 47339936 >seq798 Length=25304 Score = 304 bits (336), Expect = 1e-77 Identities = 534/778 (69%), Gaps = 0/778 (0%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 || || ||| |||| || | ||||| ||| || | | || || || ||||| | Sbjct 1752 TAGAAGTCAGCATCCAAGGTAAAAAAATTCTCTGTTAAACTTGACATCACTCCCATCCTC 1693 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || | ||||| || ||| |||||||||| || |||| | |||| ||||| ||| Sbjct 1692 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCTCC 1633 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAAT 13703 ||||| |||||||||||| | | || || || | |||| ||||| | | | | Sbjct 1632 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGT 1573 Query 13704 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13763 || || || | ||||||||| | ||| | ||| | |||||||| || || | || Sbjct 1572 CTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATGAACTTC 1513 Query 13764 ACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 ||||| | | || | || || | |||||| | |||| || | || || | Sbjct 1512 ACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAATTATTTAT 1453 Query 13824 GTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCA 13883 | | |||| | || || | | ||| ||||| || || | || ||||||||| Sbjct 1452 CTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATCA 1393 Query 13884 CAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAAT 13943 || || | ||||||||||| ||||||||||| || |||||||| | || ||||||| | Sbjct 1392 CAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGT 1333 Query 13944 CCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACT 14003 |||||||| || | ||| ||||| | ||||| || || |||||||| | || || ||| Sbjct 1332 CCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCCTTCCACT 1273 Query 14004 GCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTA 14063 |||||||| |||| | ||||| ||| | | || | ||||| | ||||| Sbjct 1272 GCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATCCAGCACAAG 1213 Query 14064 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 ||||| || | || || || | | || ||| |||||||| ||||| || | | ||||| Sbjct 1212 GCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCC 1153 Query 14124 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14183 | || || | | | || || || |||||| | | |||||||||||||| |||||| Sbjct 1152 CTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTATACATTTCAGAATGTATG 1093 Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAG 14243 |||||||| || || || || ||||| || || | ||||| | || |||| | | Sbjct 1092 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTACTGG 1033 Query 14244 TAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 ||||| || |||| |||||||| ||||| |||||| | ||||||| || |||| Sbjct 1032 CTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTGCAAAGAAAGCCA 975 >seq1004 Length=155834243 Score = 288 bits (318), Expect = 9e-73 Identities = 548/801 (68%), Gaps = 7/801 (1%) Strand=Plus/Minus Query 13530 TCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATA 13588 ||| |||| || | |||| ||| || | || | | || || || ||||| | |||| Sbjct 136911673 TCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTGATG 136911615 Query 13589 TTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAA 13648 || | ||||| || |||||||||||||| || ||||||||||| ||||| |||||||| Sbjct 136911614 CTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAA 136911555 Query 13649 ATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATC 13708 ||||||||||| | | || || || | |||| ||||| | | ||| || Sbjct 136911554 GTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCTTAAGTCTGTC 136911495 Query 13709 AGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGG 13768 || | |||||||| ||||| ||||| | |||||||| || || || || ||||| Sbjct 136911494 TGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGG 136911435 Query 13769 AATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTGTAAT 13828 | | || | | || | |||||| | ||||| || || | || || | | Sbjct 136911434 CAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCA-CTGATA-ATTATTTCTTAC 136911377 Query 13829 AATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATG 13888 |||| | || || | | ||| ||||| || || | || ||||||||||| || Sbjct 136911376 TCTCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTG 136911317 Query 13889 AAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCG 13948 | ||||| ||||| ||||||||||| || |||||| | | | ||||||| |||||| Sbjct 136911316 TAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCG 136911257 Query 13949 tttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGC 14008 ||| || | ||| ||||| | ||||| || || |||||||| || || || |||||||| Sbjct 136911256 TTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGC 136911197 Query 14009 AAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCA 14068 ||| |||| | ||||| ||| | | || | ||||| | ||||| ||||| Sbjct 136911196 AAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCA 136911137 Query 14069 TTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTC 14128 || | || || || | | || ||| |||||||| ||||| || | | ||||| | || Sbjct 136911136 ATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTC 136911077 Query 14129 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 14188 | | | | ||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 136911076 CCTGGGATCTTTTATGTAAGTGTCAATGAG---ACTATACATTTCAGAATGTATGTTTTC 136911020 Query 14189 CATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAA 14248 ||| || || || || ||||| || || | ||||| | || ||||| | ||| Sbjct 136911019 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAA 136910960 Query 14249 TCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14308 || || || |||||||| ||||| ||||| || |||||||| || |||| | || Sbjct 136910959 TCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCAGAACGTG 136910900 Query 14309 TTTAATAAAGTATTGCTCTTC 14329 ||||||||| ||| || Sbjct 136910899 GGATATAAAGTATCTCTCCTC 136910879 >seq2320 Length=142054208 Score = 120 bits (132), Expect = 3e-22 Identities = 279/417 (67%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 13893 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13952 |||||||| || |||||||| || || |||||||| | || | ||||| || | |||| Sbjct 131601589 CCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTGTTTC 131601530 Query 13953 tttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 14012 || | ||| ||||| ||||| || || || |||| | || || ||| ||||| Sbjct 131601529 TTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGCAAAG 131601470 Query 14013 GCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCA 14072 ||| | |||||||| | || | ||||||| ||||| ||||| || Sbjct 131601469 GCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACACAAGGCCCAATCT 131601410 Query 14073 GAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTA 14132 | | || || | | || ||| ||||||| ||||| || | | ||||| | ||||| Sbjct 131601409 GCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTG 131601350 Query 14133 GTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCAT 14191 | ||| || |||| ||| ||| | ||| ||| ||||| | ||||||||||| Sbjct 131601349 TTGTCTTTAAC---ATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTTTCCAT 131601293 Query 14192 AGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCT 14251 ||| || || || ||||| ||||| | ||| | || ||||| | |||| Sbjct 131601292 AGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAACTTCTTGGACAAATTG 131601236 Query 14252 TTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCC--AATATG 14306 || |||| ||||||| |||||| ||||||| ||| |||| || | | |||||| Sbjct 131601235 CTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATATG 131601179 >seq1721 Length=108792865 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 98462389 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 98462448 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || || |||||||| || || || ||||||||||| | Sbjct 98462449 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 98462508 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 98462509 CTACGACGCGTTCACC 98462524 Score = 100 bits (110), Expect = 3e-16 Identities = 107/139 (77%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13523 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTT 13581 ||| || ||| |||| || | |||| ||| || | || | | || || || ||||| Sbjct 98460563 CTAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCC 98460621 Query 13582 TTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTT 13641 | ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| | Sbjct 98460622 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 98460681 Query 13642 CCATAAAATCAAATGGATT 13660 ||||||| ||||||||||| Sbjct 98460682 CCATAAAGTCAAATGGATT 98460700 >seq699 Length=159171411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 14151 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAA 14210 |||||||| | | ||| |||||||| |||||||||||||| || || || || ||||| Sbjct 59756731 TCAATAAGGAGACCATATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAG 59756672 Query 14211 AAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTA 14270 || || | ||||| | || ||||| | ||||| || |||| |||||||| Sbjct 59756671 AAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 59756612 Query 14271 ACTATACCATCACTAGCTGCAAAAAATGCCA 14301 |||| |||||||| ||||||| || |||| Sbjct 59756611 ACTACGCCATCACTCACTGCAAAGAAAGCCA 59756581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479642818297000