Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq435 293 2e-74 seq798 289 3e-73 seq1004 269 3e-67 seq1721 114 1e-20 seq2320 98.7 1e-15 seq699 93.3 4e-14 >seq435 Length=190850796 Score = 293 bits (324), Expect = 2e-74 Identities = 536/780 (69%), Gaps = 4/780 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 47340713 TACAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 47340655 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| | | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 47340654 CTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 47340595 Query 13431 CATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAA 13490 |||||| || |||||||| | | || || || | |||| ||||| | | | Sbjct 47340594 CATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAG 47340535 Query 13491 TCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTT 13550 ||| || || | ||||||||| |||| ||||| | |||||| | || || || || Sbjct 47340534 TCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAATGAGCTT 47340475 Query 13551 TACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA- 13609 ||||| | | ||| | | || | |||||| | ||| | | | || || Sbjct 47340474 CACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAATTATTTC 47340415 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAAT 13669 ||||| | | || | || || | | ||| ||||| || || | || ||||||| Sbjct 47340414 TCTTACTC-TCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCAAAAT 47340356 Query 13670 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 13729 |||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 47340355 CACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCA 47340296 Query 13730 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 13789 ||||||||| || | ||| ||||| | || || || || |||||||| || || || | Sbjct 47340295 GTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCA 47340236 Query 13790 CTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTC 13849 |||||||||| |||| | | ||| ||| | | | | ||||| ||||| Sbjct 47340235 CTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCAGGGCA 47340176 Query 13850 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTT 13909 | ||| || | || || || | | || ||| ||||| || |||||||| | | || Sbjct 47340175 AGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATT 47340116 Query 13910 CCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTA 13969 || | || || | | | ||||| || |||||||| | |||||||||||||| |||| Sbjct 47340115 CCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTA 47340056 Query 13970 TGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCG 14029 ||||||| || || || || || ||||| ||||| | ||||||| || || || Sbjct 47340055 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAACTTCTT 47339996 Query 14030 AGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | ||||| || ||||||||||||| || || |||||||| |||||||| || |||| Sbjct 47339995 GGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 47339936 >seq798 Length=25304 Score = 289 bits (320), Expect = 3e-73 Identities = 533/779 (68%), Gaps = 2/779 (0%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 || || ||| |||| || | ||||| ||| || | | || || || ||||| | Sbjct 1752 TAGAAGTCAGCATCCAAGGTAAAAAAATTCTCTGTTAAACTTGACATCACTCCCATCCTC 1693 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || | ||||| || ||| | |||||||| || |||| | |||| ||||| ||| Sbjct 1692 TGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATATTCTCC 1633 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 ||||| || ||||||||| | | || || || | |||| ||||| | | | | Sbjct 1632 ATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCATAAGT 1573 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTT 13551 || || || | ||||||||| | ||| | ||| | |||||||| || || | || Sbjct 1572 CTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAATGAACTTC 1513 Query 13552 ACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATA-AT 13610 ||||| | | ||| | || || | |||||| | |||| || | || || || Sbjct 1512 ACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAATTATTTAT 1453 Query 13611 CTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATC 13670 |||| | | || | || || | | ||| ||||| || || | || |||||||| Sbjct 1452 CTTACTC-TCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCAAAATC 1394 Query 13671 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13730 ||| || | ||||||||||| ||||||||||| || |||||||| | || ||||||| Sbjct 1393 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAG 1334 Query 13731 TCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAAC 13790 ||||||||| || | ||| ||||| | || || || || |||||||| | || || || Sbjct 1333 TCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCCTTCCAC 1274 Query 13791 TGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCT 13850 ||||||||| |||| | ||||| ||| | | || | ||||| ||||| Sbjct 1273 TGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATCCAGCACAA 1214 Query 13851 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTC 13910 ||||| || | || || || | | || ||| ||||| || |||||||| | | ||| Sbjct 1213 GGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTC 1154 Query 13911 CTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTAT 13970 | | || || | | | || || || |||||| | | |||||||||||||| ||||| Sbjct 1153 CCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTATACATTTCAGAATGTAT 1094 Query 13971 GTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGA 14030 |||||| || || || || || ||||| ||||| | ||||||| || || | | Sbjct 1093 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTACTG 1034 Query 14031 GTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 | ||||| || ||||||||||||| || || |||||| | ||||||| || |||| Sbjct 1033 GCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTGCAAAGAAAGCCA 975 >seq1004 Length=155834243 Score = 269 bits (298), Expect = 3e-67 Identities = 544/801 (68%), Gaps = 7/801 (1%) Strand=Plus/Minus Query 13318 TCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTTTTGATA 13376 ||| |||| || | |||| ||| || | || | | || || || ||||| | |||| Sbjct 136911673 TCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCTCTGATG 136911615 Query 13377 TTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAA 13436 || | ||||| || ||||| |||||||| || ||||||||||| ||||| |||||||| Sbjct 136911614 CTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAA 136911555 Query 13437 ATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATC 13496 || |||||||| | | || || || | |||| ||||| | | ||| || Sbjct 136911554 GTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCTTAAGTCTGTC 136911495 Query 13497 AGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGG 13556 || | |||||||| ||||| ||||| | |||||||| || || || || ||||| Sbjct 136911494 TGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGG 136911435 Query 13557 AATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCTTAAT 13616 | | ||| | | || | |||||| | ||||| | | || || ||||| | Sbjct 136911434 CAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCACTGATAATTATT-TCTTACT 136911376 Query 13617 AATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATG 13676 | || | || || | | ||| ||||| || || | || ||||||||||| || Sbjct 136911375 C-TCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGAACATCAGGCAAGCAAAATCACAGTG 136911317 Query 13677 AAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCG 13736 | ||||| ||||| ||||||||||| || |||||| | | | ||||||| |||||| Sbjct 136911316 TAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTCCTCG 136911257 Query 13737 tttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGC 13796 ||| || | ||| ||||| | || || || || |||||||| || || || |||||||| Sbjct 136911256 TTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGC 136911197 Query 13797 AAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCA 13856 ||| |||| | ||||| ||| | | || | ||||| ||||| ||||| Sbjct 136911196 AAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGGCCCA 136911137 Query 13857 TTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTC 13916 || | || || || | | || ||| ||||| || |||||||| | | |||| | || Sbjct 136911136 ATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCCTTTC 136911077 Query 13917 TTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTC 13976 | | | | ||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 136911076 CCTGGGATCTTTTATGTAAGTGTCAATGAG---ACTATACATTTCAGAATGTATGTTTTC 136911020 Query 13977 TATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAA 14036 || || || || || ||||| ||||| | ||||||| || || || | ||| Sbjct 136911019 CATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAA 136910960 Query 14037 TCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTT 14096 || || || ||||||||| || || ||||| || |||||||| || |||| | || Sbjct 136910959 TCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCAGAACGTG 136910900 Query 14097 TTTAATAAAGTATTGCTCTTC 14117 ||||||||| ||| || Sbjct 136910899 GGATATAAAGTATCTCTCCTC 136910879 >seq1721 Length=108792865 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| ||||||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 98462389 CCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 98462448 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || || |||||||| || || || ||||||||||| | Sbjct 98462449 TGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 98462508 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 98462509 CTACGACGCGTTCACC 98462524 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/139 (76%), Gaps = 2/139 (1%) Strand=Plus/Plus Query 13311 CTAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTT 13369 ||| || ||| |||| || | |||| ||| || | || | | || || || ||||| Sbjct 98460563 CTAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCC 98460621 Query 13370 TTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTT 13429 | ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| | Sbjct 98460622 TCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCT 98460681 Query 13430 CCATAAAATCGAATGGATT 13448 ||||||| || |||||||| Sbjct 98460682 CCATAAAGTCAAATGGATT 98460700 >seq2320 Length=142054208 Score = 98.7 bits (108), Expect = 1e-15 Identities = 274/417 (66%), Gaps = 9/417 (2%) Strand=Plus/Minus Query 13681 CCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttt 13740 |||||||| || |||||||| || || |||||||| | || | ||||| || | |||| Sbjct 131601589 CCCTCATCACTGCTAATAAGGTCATTAGAAAATGTGAGGCCAGACATCATTCATTGTTTC 131601530 Query 13741 tttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAAC 13800 || | ||| ||||| || || || || || |||| | || || ||| ||||| Sbjct 131601529 TTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTCTACTATGGCAAAG 131601470 Query 13801 GCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCA 13860 ||| | |||||||| | || | |||||| ||||| ||||| || Sbjct 131601469 GCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACACAAGGCCCAATCT 131601410 Query 13861 GAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTA 13920 | | || || | | || ||| |||| || |||||||| | | |||| | ||||| Sbjct 131601409 GCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAATTCCCTTTCTTTG 131601350 Query 13921 GTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTAT 13979 | ||| || |||| ||| ||| | ||| ||| ||||| | |||||||| || Sbjct 131601349 TTGTCTTTAAC---ATGTGTCAGTAAAGAGATTATCCATGTCAGAATAGATGTTTTCCAT 131601293 Query 13980 AGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCT 14039 ||| || || || ||||| || || | ||||| || || || | |||| Sbjct 131601292 AGCAATTTGGAAGCCATAGAAGCAGGT---TTCTGTAGCCTGAACTTCTTGGACAAATTG 131601236 Query 14040 TTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATG 14094 || |||||||||||| ||| || ||||||| ||| |||| || | | |||||| Sbjct 131601235 CTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAAAGTCAGAATATG 131601179 >seq699 Length=159171411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 13939 TCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAA 13998 |||||||| | | ||| |||||||| ||||||||||| || || || || || ||||| Sbjct 59756731 TCAATAAGGAGACCATATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAG 59756672 Query 13999 AAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTA 14058 ||||| | ||||||| || || || | ||||| || ||||||||||||| Sbjct 59756671 AAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTT 59756612 Query 14059 ACAATACCATCACTAGCTGCAAAAAATGCCA 14089 || | |||||||| ||||||| || |||| Sbjct 59756611 ACTACGCCATCACTCACTGCAAAGAAAGCCA 59756581 Score = 93.3 bits (102), Expect = 4e-14 Identities = 119/162 (73%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 || || || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 59758648 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 59758589 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACC--TCCGAGTAAAATCTTTCTGCCA 14047 || ||||| ||||| ||||||| || ||| | | | |||| || ||| Sbjct 59758588 AAGCCATAGAAACAGTGGGCTTCTG-TAATCTGACCTTTTTGGGCTAAATTGCTCCACCA 59758530 Query 14048 AGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 |||||||||| || | |||||||| |||||||| || |||| Sbjct 59758529 AGTTTTCATTTACTACGCCATCACTTGCTGCAAAGAAAGCCA 59758488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478503820576200