Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq2078 86.0 5e-12 >seq2078 Length=44557958 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||| ||||||||||||| | ||| | ||| ||||||||| | ||||| || ||| Sbjct 3781683 CCACCATGCAGTCTTAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 3781742 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || |||||| ||| |||| ||| ||||| |||| |||| || || ||||| | || Sbjct 3781743 AAAGTACGTCTGTCTTCCAGTTGCTTGCCAGCAAGTATCAGTCTTTGCTGATCAGGAGGA 3781802 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || | | | ||| | | || || Sbjct 3781803 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATTCAAGGGTTCAACC 3781862 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 || | || || || || || | || |||||||| ||||| |||||||| Sbjct 3781863 TCGAGAGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 3781912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381303575983890