Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq435 156 6e-33 seq1004 129 9e-25 seq798 114 2e-20 >seq435 Length=190850796 Score = 156 bits (172), Expect = 6e-33 Identities = 566/876 (65%), Gaps = 21/876 (2%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||||| ||| || || || ||| | ||||| || ||||| |||||||||| ||| Sbjct 47339792 TTCCCCATGGAGTACCACGATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGG 47339851 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | | | ||||| || |||||||||||| | | | ||||| | | | | || Sbjct 47339852 ACCGCC-AGGAGGTGGACCTGTCCAAGGACATTTGGCACTGGGAATCCCTGAAGCCGGAG 47339910 Query 125118 ACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTC 125177 ||| || | |||||||| || || |||| |||||||| | ||||| || || Sbjct 47339911 ---GAGAGATACTTTATATCCCATGTTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTA 47339967 Query 125178 AACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGTGCTT 125236 || || || || || |||| ||||| ||| | ||| |||| | | || || Sbjct 47339968 AATGAAAACTTGGTGGAGTGATTTAGCCAAGAAGTTCAG-ATTACAGAAGCCTGCTGTTT 47340026 Query 125237 TTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGA 125296 || || |||||||| || || ||| | || || |||||||| | || ||||| Sbjct 47340027 CTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCTTATTGA 47340086 Query 125297 CATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGC 125355 || ||||| ||||| ||||| || || ||||| || || || || ||| ||| Sbjct 47340087 CACTTACATAAAAGATCC-CAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGC 47340145 Query 125356 CGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGT 125415 | | | | || || || | ||| | | ||||| | ||| | || || | | Sbjct 47340146 CTTGTGTCAAGAAGAATGCAGATTGGACCTTGCCCTGGATTGGGGACAAAGAGACTACCT 47340205 Query 125416 ACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTG 125475 | | || | | || || || || || || || |||||||||||||| ||| ||||| Sbjct 47340206 ATGGTGAAGGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTG 47340265 Query 125476 CGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGT 125535 | |||| || ||||||||||| || ||||| ||||| || || || ||| || Sbjct 47340266 CATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAAC 47340325 Query 125536 TTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATC 125595 |||| |||| ||||| |||||||||| ||||| || |||| ||| | | Sbjct 47340326 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTT---CAAACAGC 47340382 Query 125596 TGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGGTCATCAACATTGTAACCGATGCCGT 125653 | ||| || | ||| | || || | || | | || | | | |||| | Sbjct 47340383 T--------AGTACACAAACCATCAGAGGAGAGAGTAAGAGAAATAATTATCAATGCTAT 47340434 Query 125654 GAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTG 125713 |||||||||| ||| | || || || || | || || | | ||||| | ||| || Sbjct 47340435 TCGGATAGAACAGGAGCTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGAAGAATTG 47340494 Query 125714 CAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGG 125773 || |||||| | | ||| |||||||| ||||| | || || || || | Sbjct 47340495 CACTCTAATGAAGCAATGCATTGAGTTTGTAGCAGACAGACTTATGCTGGAACTGGGTTT 47340554 Query 125774 CCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGG 125833 ||||| ||| || | ||||||| ||||| || ||| | || ||||| || || Sbjct 47340555 TAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGG 47340614 Query 125834 TAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTA 125869 ||||| ||||| || ||||||| || || |||| Sbjct 47340615 AAAGACTAACTTCTTTGAGAAGAGAGTAGGCAAGTA 47340650 >seq1004 Length=155834243 Score = 129 bits (142), Expect = 9e-25 Identities = 568/894 (64%), Gaps = 44/894 (5%) Strand=Plus/Plus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 || ||||||| ||| || ||||| ||| | ||||| || |||| |||||||||| ||| Sbjct 136910741 TTCCCCATCAAGTACCAGGACATCTGGCAGATGTATAAGAAGGAGGAGGCCTCCTTCTGG 136910800 Query 125058 ACGGTCGAAGAGGTCG---------------------ATCTGTCCAAGGACCTGTACGAT 125096 || | ||| ||||| | | |||||||||||| | | Sbjct 136910801 ACCGCCGAGGAGGTTGTGACCACCGAACCGCAGGTGGACCTGTCCAAGGACATTCGGCAC 136910860 Query 125097 TGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTT 125156 |||||| | | | | || ||| || | |||||||| ||| || |||| |||||| Sbjct 136910861 TGGGAGTCCCTGAAGCCCGAG---GAGAGATACTTTATATCCCACGTTCTGGCTTTCTTT 136910917 Query 125157 GCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGAC 125215 || | |||||| || || || || || | | || ||||| ||||| ||| | Sbjct 136910918 GCAGCGAGCGATGGCATAGTGAATGAAAACCCGGTGGAGCGATTTAGCCAAGAAGTTCAG 136910977 Query 125216 CATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGA 125275 || |||| | || || || || |||||||| || || ||| | || || || Sbjct 136910978 -ATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGA 136911036 Query 125276 AATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCT 125334 |||||| || || ||||||| ||||| ||||| || | || || |||| Sbjct 136911037 AATGTA---TAGTCTCATTGACACTTACATAAAAGATCC-CAGGGAAAGGGAATTTCTCT 136911092 Query 125335 TTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGA 125394 | || || || || ||| |||| | | | || ||||| | |||| | || |||| Sbjct 136911093 TCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGA 136911152 Query 125395 TCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCA 125454 | | ||| | || || | || | || | | || || || || || || || |||| Sbjct 136911153 TTGGGGACAAAGAGGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCA 136911212 Query 125455 TCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCG 125514 |||||||||| ||| |||||| |||| || ||||||||||| || ||||| ||||| Sbjct 136911213 TCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATGCCTA 136911272 Query 125515 GACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCA 125574 | || | ||| || |||| |||| ||||| |||||||||| ||||| Sbjct 136911273 GCCTCATATTTTCTAATGAACTTATTAGCAGAGAGGAGGGTTTACACTGTGATTTTGCTT 136911332 Query 125575 TTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCAGATCCAGC-GATGAAAAGGTCATC 125633 || |||| ||| | || | | | | ||| | || || | || | Sbjct 136911333 GCCTGATGTT---CAAACACCTAGGACAC-------AAACCATCAGAGGAGAGAGTAAGA 136911382 Query 125634 AACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTC 125693 || | | || | | ||| || ||||||||| ||| | || || || || | || || Sbjct 136911383 AATAAT-TATCAG-TGCTGTTCCGATAGAACAGGAGCTCCTCACTGAGGCCTTGCCTGTG 136911440 Query 125694 AGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGT 125753 | | ||||| ||||| |||| |||||| | ||| | |||||||| ||||| | Sbjct 136911441 AAGCTCATTGGGATGAATTGCACTCTAATGAAGCAATACGTTGAGTTTGTAGCAGACAGA 136911500 Query 125754 CTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATG 125813 || | || || | ||||| ||| || | ||||||| ||||| || ||| Sbjct 136911501 CTTAAGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAGAATCCATTTGACTTTATG 136911560 Query 125814 ACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAG 125867 | || ||||| || || ||||| ||||| || ||||||| || ||||| Sbjct 136911561 GAGAATATTTCACTGGAAGGAAAGACTAACTTCTTTGAGAAGAGAGTAGGCGAG 136911614 >seq798 Length=25304 Score = 114 bits (126), Expect = 2e-20 Identities = 536/841 (64%), Gaps = 24/841 (3%) Strand=Plus/Plus Query 125034 AAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTAC 125093 || ||||| |||||||||| ||||| | ||| ||||| || ||||||| ||| | | Sbjct 868 AAGAAGGCGGAGGCCTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCA--GACATTCAG 925 Query 125094 GATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTC 125153 | ||||| | | | | || || || | |||||||| ||| || |||| ||| Sbjct 926 CACTGGGAATCCCTGAAGCCCGAG---GAAAGATACTTTATATCCCACGTTCTGGCTTTC 982 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAG--AGT 125211 ||||| | ||||| || || || || || || || ||||| | | || ||| Sbjct 983 TTTGCAGTGAATGATGGCATAGTAAATGAAAACTTGGTGGAGCGATT-TAGCCAGTAAGT 1041 Query 125212 TGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACT 125271 | | || |||| | || || || || |||||||| || || ||| | || | Sbjct 1042 TCAG-ATCACAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATT 1100 Query 125272 CGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTAAACACATG- 125330 | |||||||| | | ||||||| || || ||||| ||||| || || Sbjct 1101 CTGAAATGTATAGTCTCCGTATTGACACTTATATAAAAGATCC-CAACGAAAGGGAATTT 1159 Query 125331 CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGG 125390 ||||| || || || || ||| |||| | | | || ||||| | |||| | | Sbjct 1160 CTCTTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCTTGTGC 1219 Query 125391 TGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAG 125450 ||||| | ||| | | || | || | || | | || || || || || || || Sbjct 1220 TGGATTGGGGACAAAGACGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAA 1279 Query 125451 GGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATG 125510 ||| |||||||||| ||| |||||| |||| || ||||||||||| || ||||| ||| Sbjct 1280 GGCGTCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACTGATG 1339 Query 125511 CCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTT 125570 || || || || ||| || |||| |||| ||||| |||||||||| ||| Sbjct 1340 CCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGATTTT 1399 Query 125571 GCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA-GATCCAGC-GATGAAAAGG 125628 || || |||| ||| | || ||| || | ||| | || || | | Sbjct 1400 GCTTGCCTGATGTT---CAAACA--------CCTAGTACACAAACCATCAGAGGAGAGAG 1448 Query 125629 TCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTAC 125688 | | | || | | ||| | || |||||||||| ||||| || || || || | | Sbjct 1449 TAAGATAAATAATTATTGATTCTGTTTGGATAGAACAGGAGTTCCTCACTGAGGCCTTGC 1508 Query 125689 CGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAG 125748 | || | | ||||| ||||| |||| |||| | | |||| ||||||||||||| Sbjct 1509 CTGTGAAGTTCATTGGGATGAATTGCACTCTAAGGAAGCAACACATTGAGTTTGTGGCAG 1568 Query 125749 ATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATT 125808 | | || || || || | ||||| ||| || | | ||||| ||||| | Sbjct 1569 ACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTTCAGAGTAGAAAATCCATTTGACT 1628 Query 125809 TCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGT 125868 | ||| | || |||| | || ||||| ||||| | ||||||| || |||||| Sbjct 1629 TTATGGAGAATATTTCACAGCAAGGAAAGACTAACTTCTCTGAGAAGAGAGTAGGCGAGT 1688 Query 125869 A 125869 | Sbjct 1689 A 1689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740927615675800