Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq1441 107 1e-18 seq1195 107 1e-18 seq699 107 1e-18 seq9075 104 1e-17 seq1997 104 1e-17 seq848 102 5e-17 seq2320 98.7 6e-16 seq1 89.7 3e-13 >seq1441 Length=130397257 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 28401008 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 28400949 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 28400948 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 28400889 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 28400888 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 28400832 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 28400831 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 28400793 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || ||| |||| ||||||||| | || || Sbjct 73072841 CAACACAAGATGAAGAGTAGACTCCTTCTGAATACTGTAGTCAGACAAAGTACGTCTATC 73072900 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 73072901 TTCCAGTTGCTTGCCAGCAAAGATCAGTCCTTGCTGATCAGGAGGAATTCCTTCCTTATC 73072960 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| || ||||| ||| ||||| ||| | || || || Sbjct 73072961 CTGGATCTTGGCCT---TTACATATTCTATCGTATCGGAGGGTTCAACCTTGAGGGTGAT 73073017 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 || || |||||||||||||| |||||||| || || || Sbjct 73073018 GGTCTTCCCCGTAAGAGTTTTCACGAAAATATGAATTTT 73073056 >seq1195 Length=124281992 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 101827623 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 101827682 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 101827683 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 101827742 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 101827743 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCAGAGGGTTCAACCTCGAGGGTGAT 101827799 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 101827800 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 101827838 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || || || |||| ||||| |||| || |||||||| || ||||||||||||| Sbjct 115888854 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAG 115888913 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 | | || | || |||| |||||||| ||| || || | |||||||| | | Sbjct 115888914 AGAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 115888973 Query 33261 GTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | |||||||| || || | | | ||| || || | | ||| ||||| |||| | Sbjct 115888974 GGATGCCTTCCTTGTCTTGGATCTTTGCC---TTGACGTTCTCAATGGTGTCACTGGGCT 115889030 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 || || || || || || || || || || || || ||||| || |||||| Sbjct 115889031 CGACCTCAAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 115889083 >seq699 Length=159171411 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 642784 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 642843 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 642844 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 642903 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 642904 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 642960 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 642961 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 642999 Score = 107 bits (118), Expect = 1e-18 Identities = 156/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 94894883 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 94894824 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 94894823 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 94894764 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 94894763 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 94894707 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 94894706 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 94894668 Score = 96.9 bits (106), Expect = 2e-15 Identities = 163/235 (69%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 33141 CACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAG 33200 |||| || | | || |||||| | ||| || ||||| || || || ||||| |||| Sbjct 110765532 CACCACCACGAAGCCTCAACACAAGATGAGGAGTAGACTCCTTCTGAATGTTGTAGTCAG 110765591 Query 33201 ACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGG 33260 ||||||| || || |||| |||||| ||| ||| || | | |||||| || | | Sbjct 110765592 ACAAATTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 110765651 Query 33261 GTATGCCTTCTTTTTC---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTT 33317 | || ||||| || || | | | ||| |||| ||| ||||| || ||||| Sbjct 110765652 GAATTCCTTCCTTATCCTGGATCTTGGCC---TTTATATTTTCTATCGTATCCGAGGGTT 110765708 Query 33318 GAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 ||| || || || || |||||||| ||||| |||| |||||||| ||||| || Sbjct 110765709 CAACCTCAAGGGTGATGGTTTTTCCTGTAAGGGTTTCCACGAAAATCTGCATTTT 110765763 Score = 89.7 bits (98), Expect = 3e-13 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33142 ACCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGA 33201 ||||||||| | |||| |||| |||| ||||||||||| || |||||||| ||||| Sbjct 77803127 ACCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 77803186 Query 33202 CAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGG 33261 | | || | || |||| ||||| || ||| || | | |||||||| | ||| Sbjct 77803187 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 77803246 Query 33262 TATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTG 33318 ||||||||||| || | | | ||| || || ||| || ||||| | || | Sbjct 77803247 GATGCCTTCTTTATCTTGGATCTTGGCC---TTCACATTTTCGATGGTGTCACTAGGCTC 77803303 Query 33319 AACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || || || || || || || || || ||||| || ||||| Sbjct 77803304 CACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803354 Score = 84.2 bits (92), Expect = 1e-11 Identities = 150/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 33155 CGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGG 33214 |||| |||| ||||| ||||||||||| || || ||||||||||| | | || | Sbjct 77802684 CGCAGGACCAGGTGCAAGGTCGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCA 77802743 Query 33215 TCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTT- 33273 || |||| ||||| || ||| || | | |||||||| | ||| ||||||||||| Sbjct 77802744 TCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTA 77802803 Query 33274 --TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTT 33331 || | | | ||| || || ||| || ||||| | || | || ||||| || Sbjct 77802804 TCTTGGATCTTGGCC---TTCACATTTTCGATGGTGTCACTAGGCTCCACCTCCAGGGTG 77802860 Query 33332 ATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || || || || || || ||||| || ||||| Sbjct 77802861 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77802898 >seq9075 Length=2552 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 2466 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 2407 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 2406 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 2347 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| || || || ||||| ||| || || || || Sbjct 2346 CTGGATCTTGGCCT---TTACATTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGAT 2290 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 2289 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 2251 >seq1997 Length=47448759 Score = 104 bits (114), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | || || Sbjct 31032768 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 31032709 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 31032708 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 31032649 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| |||| || ||||| ||| || || || || Sbjct 31032648 CTGGATCTTGGCCT---TTACATTTTCTTTCGTATCCGAGGGTTCAACCTCGAGGGTGAT 31032592 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 31032591 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 31032553 >seq848 Length=158406734 Score = 102 bits (112), Expect = 5e-17 Identities = 157/220 (71%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| ||||| | | ||||| || || || ||||| ||||||||| | || || Sbjct 16978928 CAACACAAAATGAAGAATAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATC 16978987 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 ||||| |||||| ||| ||| || | | |||||| || | || || ||||| || | Sbjct 16978988 ATCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT- 16979046 Query 33277 GCTA-ATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 ||| ||| |||| |||| ||| ||||| | ||||||||| || || || | Sbjct 16979047 GCTGGATCTTGGCCT---TTACATTTTCTATCGTATTCCAGGGTTGAACCTCGAGGGTGA 16979103 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 | || || ||| |||| |||||||||||||| ||||| || Sbjct 16979104 TGGTCTTCCCCATAAGGGTTTTTACGAAAATCTGCATTTT 16979143 >seq2320 Length=142054208 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/219 (70%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||||||||| | | || Sbjct 106998519 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGACAAAGTACATCCATC 106998460 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 106998459 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 106998400 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| | | || || || || Sbjct 106998399 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAGCCTCGAGGGTGAT 106998343 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 106998342 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 106998304 >seq1 Length=210400635 Score = 89.7 bits (98), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 10/219 (5%) Strand=Plus/Minus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||| | ||| | || ||||| || || || ||||| ||| || | || || Sbjct 34242947 CAACACAAGATGAAGAGTAGACTCCTTCTGAATGTTGTAGTCA----AAGTACGTCCATC 34242892 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| |||||| ||| ||| || | | |||||| || | || || ||||| || || Sbjct 34242891 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 34242832 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| |||| ||| ||||| || ||||| ||| || || || || Sbjct 34242831 CTGGATCTTGGCCT---TTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGAT 34242775 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATGTT 33372 |||||||||||||| ||||| |||||||| ||||| || Sbjct 34242774 GGTTTTTCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 34242736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318722412126090