Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq435 311 7e-80 seq798 300 1e-76 seq1004 271 7e-68 seq1882 96.9 3e-15 seq699 93.3 4e-14 seq1721 84.2 2e-11 >seq435 Length=190850796 Score = 311 bits (344), Expect = 7e-80 Identities = 515/743 (69%), Gaps = 8/743 (1%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| | || ||||| || ||||| ||||| || |||| Sbjct 47340673 TTGACATCACTCCCATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 47340614 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| || || ||||| | || | || || Sbjct 47340613 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 47340558 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | ||| || | | |||||| || |||||||| ||| | || ||||||| | Sbjct 47340557 CTAAAACCCAGTTCCAGCATAAGTCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGA 47340498 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||| | || || | || ||||||| || || || | | | | |||||| Sbjct 47340497 GTGCAATTCTTCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATC 47340438 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 || || | ||||| ||| ||||||| | | |||| |||| | | ||| || Sbjct 47340437 CGAATAGCATTGATAATTATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGCTGT 47340378 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || |||||||||||||| || || |||||||| || || || || || Sbjct 47340377 TTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTA 47340318 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 47340317 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 47340258 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || ||||| || || ||||| ||||| ||||| |||| | | ||||||||| ||| | Sbjct 47340257 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTC 47340198 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | ||| | | ||||| || ||| | ||| || | || || || ||| || Sbjct 47340197 TCTTTGTCCCCAATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTT 47340138 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || || || || | | | | |||| || ||| || ||||| || || | Sbjct 47340137 TCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGG 47340078 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| | Sbjct 47340077 AGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAG 47340018 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || |||| | ||||||||| | ||||| || | |||||||| || ||||| || Sbjct 47340017 GCTTCTGTAATCTGAACTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCA 47339958 Query 13559 TCACTAGCAGCaaaaaaaGCAAG 13581 ||||| || ||||| ||||| || Sbjct 47339957 TCACTTGCTGCAAAGAAAGCCAG 47339935 >seq798 Length=25304 Score = 300 bits (332), Expect = 1e-76 Identities = 527/767 (69%), Gaps = 8/767 (1%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| |||| ||||| || ||| | ||||| || |||| Sbjct 1712 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTC 1653 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 ||| |||||||| |||||||| || || ||||||| || | || || Sbjct 1652 CTTGCTGTGAAATATTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACC----TTG 1597 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | ||| || | | |||||| || |||||||| |||| || ||| ||| | Sbjct 1596 CTAAAACCCAGTTCCAGCATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGA 1537 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || || || ||||||| || || || | || | | |||||| Sbjct 1536 GTGCAATTCATCCCAATGAACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATC 1477 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| | || |||| ||| | ||||| | | |||| |||| | | ||| || Sbjct 1476 CAAACAGAATCAATAATTATTTATCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGT 1417 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || |||||||||||||| || || |||||||| || || || || || Sbjct 1416 TTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTA 1357 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||||| || || ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 1356 GAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 1297 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || ||||| || | ||||| ||||| ||||| |||| | | ||||||||| ||| Sbjct 1296 CCAGAAAAGAAGACGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCG 1237 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | ||| | | ||||| |||||||| ||| || | || || || ||| || Sbjct 1236 TCTTTGTCCCCAATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTT 1177 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || || || || | | | | |||| || ||| |||||||| || || Sbjct 1176 TCAATGGCATTGAAGAGAAATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGG 1117 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| | Sbjct 1116 AGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGG 1057 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || |||| | |||||||| | ||||| || | |||||||| || ||||| || Sbjct 1056 GCTTCTGTGATCTGAACTTACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCA 997 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttC 13605 ||| | | ||||| ||||| || | ||| ||||| | | |||| Sbjct 996 TCATTCACTGCAAAGAAAGCCAGAACGTGGGATATAAAGTATCTTTC 950 >seq1004 Length=155834243 Score = 271 bits (300), Expect = 7e-68 Identities = 512/750 (68%), Gaps = 15/750 (2%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | |||| |||| ||||| || ||||| ||||| || |||| Sbjct 136911639 TTGACATCACTCCCATCCTCTGATGCTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTC 136911580 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTT 12958 |||| | |||||||| |||||||| || || ||||| | || | || || Sbjct 136911579 CTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACC----TTG 136911524 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 || | || | ||| || | |||||| || |||||||| | ||| || ||||||| | Sbjct 136911523 CTAAAACCCAGTTCCAGCTTAAGTCTGTCTGCTACAAACTCAACGTATTGCTTCATTAGA 136911464 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || ||||| || || | || ||||||| || || || | | | | |||||| Sbjct 136911463 GTGCAATTCATCCCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATC 136911404 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||| || ||||| ||| ||| || | | |||| |||| | | ||| || Sbjct 136911403 GGAACAGCACTGATAATTATTTCT--TACTCTCTCCTCTGATGGTTTGTGTCCTAGGTGT 136911346 Query 13139 TTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTT 13198 || ||||||| || |||||||||||||| || || || ||||| || || || || || Sbjct 136911345 TTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCCTCTCTGCTAATAAGTTCATTA 136911286 Query 13199 GAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAA 13258 |||||| | || | ||||| || |||||||| || | ||| ||||| | ||||| ||| Sbjct 136911285 GAAAATATGAGGCTAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAA 136911226 Query 13259 CCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTA 13318 || ||||| || || ||||| ||||| ||||| |||| | | ||||||||| ||| Sbjct 136911225 CCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCC 136911166 Query 13319 TTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | ||| | | ||||| |||||| | ||| || | || || || ||| || Sbjct 136911165 TCTTTGTCCCCAATCCAGCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTT 136911106 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 || || || || || | | | | ||||| | ||| | || ||| | ||||| Sbjct 136911105 TCAATGGCATTGAAGAGAAATTCCCTTTCCCTGGGATCT----TTTATGTAAGTGTCAAT 136911050 Query 13439 AAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCT 13497 || ||||||||||| ||||| || |||||||| || |||||||| ||||| ||||| | Sbjct 136911049 GAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCG 136910990 Query 13498 AGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCC 13557 || |||| | ||||||||| | ||||| || | |||||| || ||||| || Sbjct 136910989 GGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTCCACCGGGTTTTCATTCACTATGCC 136910930 Query 13558 GTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 || || || ||||| ||||| || | ||| Sbjct 136910929 ATCGCTCGCTGCAAAGAAAGCCAGAACGTG 136910900 >seq1882 Length=96796970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| |||| Sbjct 92365323 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTTT 92365264 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || | |||||| || || || || | Sbjct 92365263 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 92365204 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 92365203 CCACCACTCTTTCCCC 92365188 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 92373892 TGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 92373833 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 92373832 ATAAAATCAAAAGGATTTT 92373814 >seq699 Length=159171411 Score = 93.3 bits (102), Expect = 4e-14 Identities = 122/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGG 13480 |||||||| || || | | ||||||||||| ||||| || |||||||| || |||||| Sbjct 59758648 ATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 59758589 Query 13481 AAACCATAAAAACATCTAGCCTCTGATACCTGAAC-TTCGGAGTAAAATCTTTCTGCTAA 13539 || ||||| ||||| || |||| | |||| | || | | |||| || | || Sbjct 59758588 AAGCCATAGAAACAGTGGGCTTCTGTAATCTGACCTTTTTGGGCTAAATTGCTCCACCAA 59758529 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 |||||| || |||| || ||||| || ||||| ||||| || | ||| Sbjct 59758528 GTTTTCATTTACTACGCCATCACTTGCTGCAAAGAAAGCCAGAACGTG 59758481 >seq1721 Length=108792865 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 4/89 (4%) Strand=Plus/Plus Query 13434 TCAATAAG----CTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAA 13489 |||||||| ||||||||||| |||||||| |||||||| || |||||||| ||||| Sbjct 98464478 TCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGCAATTTGGAAGCCATAG 98464537 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTC 13518 ||||| | || |||| | ||||||||| Sbjct 98464538 AAACAGCGGGCTTCTGTGATCTGAACTTC 98464566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430907786845410