Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1334 89.7 3e-13 seq545 86.0 3e-12 seq699 82.4 4e-11 >seq1334 Length=132174527 Score = 89.7 bits (98), Expect = 3e-13 Identities = 75/92 (82%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 11441 AATAAAAAAT--CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 || ||||||| || | |||||| | |||||||||| ||||||| ||||||||||| Sbjct 128255779 AAAAAAAAATTCCAGACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGC 128255720 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 || ||||||| |||||||||||||| ||||| Sbjct 128255719 ACCACGCTCTAACCAACTGAGCTAACCGGCCG 128255688 >seq545 Length=171630274 Score = 86.0 bits (94), Expect = 3e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| |||||| | |||||||||| ||||||| ||||||||||||| ||||||| | Sbjct 1650404 CAAAGTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAA 1650345 Query 11511 CCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 1650344 CCAACTGAGCTAACCGGCC 1650326 Score = 84.2 bits (92), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||||||| || | ||||| | |||||||||| ||||||| ||||||||||||| | Sbjct 1552128 TAAAAAAACATCT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCA 1552070 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||||||| |||| Sbjct 1552069 CGCTCTAACCAACTGAGCTAACCGGCC 1552043 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1536730 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1536789 Query 11528 CC 11529 || Sbjct 1536790 CC 1536791 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1975377 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1975436 Query 11528 CC 11529 || Sbjct 1975437 CC 1975438 >seq699 Length=159171411 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 73639979 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 73639920 Query 11528 CC 11529 || Sbjct 73639919 CC 73639918 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261445929744580