Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq2049 143 3e-29 >seq2049 Length=49578535 Score = 143 bits (158), Expect = 3e-29 Identities = 115/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || ||| ||||||| ||||||||||||||||||||||| || | Sbjct 28850654 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 28850595 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| || ||||| || || ||||| || ||| |||||||||||||||||||| || | Sbjct 28850594 TGCCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCTCTGGGGGAAA 28850535 Query 10260 ATCTAAAGACCCTAAGGCT 10278 | || |||||| | ||||| Sbjct 28850534 AGCTGAAGACCTTCAGGCT 28850516 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| ||||||||||||||||||| |||||||| || || |||| | Sbjct 28847992 AGCTCCAAGAGAAAGGTATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 28847933 Query 10419 TAGAAGCATACATGACCATGAAA 10441 ||||||| |||||||| |||||| Sbjct 28847932 TAGAAGCCTACATGACAATGAAA 28847910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547282005980800