Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq1997 183 4e-41 seq1 120 4e-22 >seq1997 Length=47448759 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| |||| || || |||| |||||| ||||| || |||| || |||||||| ||| Sbjct 19537735 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCATACT 19537676 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| ||||| |||||||| || || |||||||| |||||||||||||| ||||| Sbjct 19537675 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 19537616 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | |||| || || || |||| ||||| |||||||| | Sbjct 19537615 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 19537556 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||| ||||||||| | ||| |||||||| || || ||||| |||| Sbjct 19537555 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 19537507 Score = 168 bits (186), Expect = 9e-37 Identities = 228/318 (72%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 8659 GAGCTCCTTATTGGGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGAC 8718 |||||| || ||||| | ||| | | || ||||| ||||| ||||| | |||| Sbjct 19539472 GAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCTTTCACGTTATTGCAGAT 19539413 Query 8719 TAGAGACTGGATAGTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCT 8778 |||||||| || | || | |||| ||| | || ||||| ||||| || || ||||| Sbjct 19539412 GAGAGACTGAATTGAGGCCGTGTTGATGATTCTGAAACCCACTTCTCCACCAAAAGTGCT 19539353 Query 8779 GGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGG 8838 || ||||||||| | || || || ||||| || |||| || ||||| | ||| || || Sbjct 19539352 TGGCTTCCAGTAAGCGGGAGAACATATGACATTACCCATAAGTCCTTTCAAGGAGAATGG 19539293 Query 8839 AGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8898 || || | || | || |||||||||||||||| | ||||| |||||||| |||| Sbjct 19539292 TGCTCCAACTTCTACCATTGTCTCACCGAAGATGGCATCCGGACGAGGCTTTTCTACCAG 19539233 Query 8899 GAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8958 | | | |||| ||||| ||| |||||||| || || || || | | || ||||| Sbjct 19539232 AAGGGCAGGATACAGCTCCATAGCATCGATGTCACCATAGAGTGCTTTCAACTCTGCAGC 19539173 Query 8959 GATTTCCTTTTCTCCTGT 8976 |||||||| |||||||| Sbjct 19539172 CATTTCCTTCTCTCCTGT 19539155 Score = 123 bits (136), Expect = 4e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 19536602 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 19536543 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| |||||||| || ||| |||| || |||||||| | || | |||||||||||| Sbjct 19536542 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 19536483 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 10185 || |||| | || | |||||| ||||||||||| Sbjct 19536482 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 19536445 Score = 100 bits (110), Expect = 4e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||||| || || || ||||| || || || | ||| || ||||| || || | Sbjct 19535989 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 19535930 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 ||||||||||| || ||||| |||||||||||| ||| | ||||| || |||||| | Sbjct 19535929 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAGGTT 19535870 Query 10407 GGAGGGCTGTCAATCAAATCGGATCTACCTGAA 10439 || || || |||||||||| | ||| ||||| Sbjct 19535869 GGTGGACTCTCAATCAAATGTGCTCTGGCTGAA 19535837 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| | |||||| ||||| || ||||| ||||| || | |||||||| || || | Sbjct 19538323 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAACTCCATGTTCC 19538264 Query 9382 ATGAGTATGGAATTGTTGTAAACGAA--GTTAATGTAGTCATACTTTGTTTTATCAATCT 9439 | | || || |||||||| | || ||| || ||| || || | || ||| | Sbjct 19538263 AGTAACATAGAGTTGTTGTAGATAAACTGTTGAT--AGTTGTAGTTCTGGTCATGAATTT 19538206 Query 9440 CAAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9499 ||| | || |||| || | |||||||||||| | | | |||||||| | | |||| Sbjct 19538205 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGCGTATTAAACTCAGCAGCAATAC 19538146 Query 9500 GATTTTGGTACTGGAA 9515 |||||||||||||||| Sbjct 19538145 GATTTTGGTACTGGAA 19538130 >seq1 Length=210400635 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 ||||||| || ||| |||| || ||||| || ||||| || |||||||| |||| | Sbjct 166173959 TCTTGACAATGTTAAAGCCCATCTCACCGCCAAATGTGCTTGGCTTCCAGTATTCCGGAG 166173900 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 | |||||| ||| | | ||| || ||||||||||| |||||||| | ||| | || | Sbjct 166173899 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 166173840 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 |||| || ||||| | ||| ||| || |||||| | | | || | || ||||||| Sbjct 166173839 TCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAAGAAGCAGCCCAGGATAGAACTCCA 166173780 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || || |||||||| || | || | ||| || || || ||||| |||||| Sbjct 166173779 ACGCATCAATGTCTCCATACAACTCCTCCAATTCCGCTGCCATCTCCTTCTCTCCT 166173724 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 10029 CTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCC--TCGCGCCAAATCAGTCCTAA 10086 || |||||||| |||| | || |||||| | || || || |||| | ||| | | Sbjct 166161666 CTCACCCCATGACCCAAGGCCTTGGTGAAGCCAGGACCCATCTTGCCAGA--AGTTTTGA 166161609 Query 10087 AAAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGAT 10146 | |||||||| ||||| ||||| |||| ||||||||||| | ||||||||| ||||| | Sbjct 166161608 AGAACTGGTGGGTGAAGTGTTGTGCAAAGAAGGCAAACATGAGGTTGGTGCCTTGGGGGT 166161549 Query 10147 CGGGAGTGAAGGTCCTCC 10164 | || |||| |||||| Sbjct 166161548 CAGGTATGAACTTCCTCC 166161531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708398992565200