Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq545 176 7e-40 seq1997 138 2e-28 seq1195 123 4e-24 >seq545 Length=171630274 Score = 176 bits (194), Expect = 7e-40 Identities = 202/272 (74%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | || || |||||||||||||| || |||||||| ||||| Sbjct 2392565 CGCCAAGCGTCATCGTAAAGTGCTGCGGGATAACATCCAAGGCATTACCAAGCCGGCTAT 2392624 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| | ||||| || || ||||| |||| || ||| | || || |||| Sbjct 2392625 CCGACGCCTGGCCAGGCGTGGCGGGGTTAAGCGAATCTCGGGTTTGATTTACGAGGAGAC 2392684 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| ||||||| ||| ||| |||| ||||| | ||| || || Sbjct 2392685 TCGCGGGGTCCTCAAGGTCTTCCTGGAGAACGTGATCCGAGATGCGGTGACCTACACGGA 2392744 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| ||||| |||||||| | || || || |||| |||||||| Sbjct 2392745 GCACGCCAAGCGAAAGACCGTCACTGCCATGGATGTGGTTTACGCGCTGAAGCGTCAAGG 2392804 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703 ||| | | | ||||| || || |||||| || Sbjct 2392805 CCGCACGCTGTATGGCTTCGGCGGTTAATTTT 2392836 Score = 149 bits (164), Expect = 1e-31 Identities = 191/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||| | | | || || || |||||||| || ||||||||||| || || Sbjct 2398575 GCCAAGCGCCATCGTA-AGGTGTTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 2398517 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| ||||| || |||||||| | ||||| || |||| || |||| Sbjct 2398516 CCGGCGTCTTGCTCGGCGTGGCGGGGTCAAGCGGATATCTGGTCTGATCTACGAGGAGAC 2398457 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||| | ||| ||| |||| ||| ||| || |||||| || Sbjct 2398456 TCGAGGGGTGCTCAAGGTGTTCTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 2398397 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || |||||||| ||||| ||||||| | ||||| || | || || || || Sbjct 2398396 ACACGCCAAGCGTAAGACGGTCACTGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2398337 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | |||| || ||||| Sbjct 2398336 ACGCACCCTTTACGGCTTTGG 2398316 Score = 147 bits (162), Expect = 3e-31 Identities = 189/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | | || || |||||||| |||||||||||||| || || Sbjct 2253486 CGCCAAGCGTCATCGTAAAGTATTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCAT 2253545 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 2253546 CCGGCGCTTGGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGTCTTATCTATGAGGAGAC 2253605 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || ||||| | ||||| | | || |||| |||||| || ||| || || Sbjct 2253606 TCGCGGAGTGCTGAAGGTTTTCCTGGAAAATGTCATCCGCGATGCTGTCACCTACACGGA 2253665 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| ||||| ||||||| | ||||| || | || || || || Sbjct 2253666 ACACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2253725 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 2253726 ACGCACTCTGTATGGCTTCGG 2253746 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| ||||| | | || || || || |||||||| || || || || || |||| Sbjct 2330398 CGCTAAGCGACATCGTAAGGTC-CTCCGGGACAACATCCAGGGCATTACAAAACCGGCTA 2330340 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || || |||| || || ||||| |||||||| | ||||| | | ||||| |||| Sbjct 2330339 TTCGCCGATTGGCGCGGCGCGGTGGCGTCAAGCGCATTTCTGGTCTCATTTATGAGGAGA 2330280 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | ||| | || | ||||| | | ||| || | |||||| || || || | Sbjct 2330279 CTCGAGGTGTGCTTAAAGTTTTCCTGGAAAACGTCATTCGAGATGCTGTCACTTACACGG 2330220 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||||||||| |||||||| |||| ||||| | |||||||| | Sbjct 2330219 AGCACGCGAAACGCAAGACTGTCACTGCCATGGATGTCGTATATGCTCTAAAACGTCAGG 2330160 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | |||||||| || Sbjct 2330159 GGCGCACTCTGTATGGTTTCGG 2330138 Score = 136 bits (150), Expect = 6e-28 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || ||||| |||||||| || ||||||||||| || || Sbjct 1100607 CGCCAAGCGCCACCGCAAGGTGCTGCGAGACAACATCCAGGGCATCACCAAGCCCGCCAT 1100666 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 1100667 CCGGCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1100726 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | ||||| ||| ||| |||| || || || ||| || || Sbjct 1100727 TCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGGGACGCCGTCACCTACACGGA 1100786 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | || || || | || || || || Sbjct 1100787 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 1100846 Query 16672 CCG 16674 ||| Sbjct 1100847 CCG 1100849 Score = 136 bits (150), Expect = 6e-28 Identities = 178/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 1105794 CGCCAAGCGCCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 1105736 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| ||||| || |||||||| |||| || | |||| || |||| Sbjct 1105735 TCCGGCGCCTGGCTCGCCGTGGCGGCGTCAAGCGCATCTCCGGCCTCATCTACGAGGAGA 1105676 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || | ||| | || || ||| ||| |||| || || || ||| || | Sbjct 1105675 CTCGCGGGGTGCTCAAGGTGTTTCTGGAGAACGTCATCCGGGACGCCGTCACCTACACGG 1105616 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| |||||| ||||||| | || || || | || || || | Sbjct 1105615 AGCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGG 1105556 Query 16671 GCCG 16674 |||| Sbjct 1105555 GCCG 1105552 Score = 114 bits (126), Expect = 2e-21 Identities = 171/243 (70%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1678770 CGCCAAGCGCCACCGCAAGGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCAT 1678711 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || || | || ||||| |||| || | |||| || |||| Sbjct 1678710 CCGGCGCCTGGCTCGCCGCGGCAGCGTGAAGCGCATCTCCGGCCTCATCTACGAGGAGAC 1678651 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| ||||| ||| ||| ||| || || || ||| || || Sbjct 1678650 CCGCGGGGTGCTCAAGGGGTTCCTGGAGAACGTGATCTGGGACGCCGTCACCTACACGGA 1678591 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 1678590 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTAAGCGCTCAAGCGCCAGGG 1678531 Query 16672 CCG 16674 ||| Sbjct 1678530 CCG 1678528 Score = 111 bits (122), Expect = 2e-20 Identities = 181/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || || | | || || || |||||||| || ||||||||||| || || Sbjct 2202703 CGCTAAGCGCCACCGGAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCCGCCAT 2202644 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || || || || || || || |||| || | | ||||| |||| Sbjct 2202643 CCGGCGCCTGGCCCGACGCGGCGGCGTAAAACGCATCTCGGGCCTTATTTATGAGGAGAC 2202584 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | || || ||| || |||| || || || || || || Sbjct 2202583 CCGCGGGGTGCTCAAGGTGTTTCTGGAGAATGTGATCCGGGACGCCGTCACTTACACGGA 2202524 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||| |||||| ||||||| | ||||| || | || || || || Sbjct 2202523 GCACGCCAAGCGCAAGACGGTCACCGCCATGGACGTGGTCTACGCGCTCAAGCGCCAGGG 2202464 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || || ||||| Sbjct 2202463 CCGCACCCTCTACGGCTTTGG 2202443 >seq1997 Length=47448759 Score = 138 bits (152), Expect = 2e-28 Identities = 190/263 (72%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTC-GAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| |||||||||||||||| ||||||||||| || | Sbjct 3828755 CGCCAAGCGCCACCGCA-AGGTCTTGAGAGATAACATCCAAGGCATCACCAAGCCGGCGA 3828697 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| |||| || || | || || |||| Sbjct 3828696 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCCGGCCTGATTTACGAGGAGA 3828637 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| | ||||| ||| ||| || | || || || ||| || | Sbjct 3828636 CCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCGGTCACCTACACGG 3828577 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| |||||||| | || || || | || || || | Sbjct 3828576 AGCACGCCAAGCGCAAGACCGTCACGGCCATGGATGTGGTGTACGCGCTCAAGCGCCAGG 3828517 Query 16671 GCCGTAAGATTTATGGTTTTGGA 16693 | || | | || || |||||| Sbjct 3828516 GGCGCACCCTGTACGGCTTTGGA 3828494 >seq1195 Length=124281992 Score = 123 bits (136), Expect = 4e-24 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 || ||||||||||| || || ||||| || || || || || ||||| ||||| || ||| Sbjct 6718684 GACAACATCCAAGGCATTACTAAGCCCGCGATTCGCCGCCTCGCTCGACGTGGGGGCGTC 6718743 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| ||||||| | |||| ||||||| || | || | || ||||||| || Sbjct 6718744 AAGCGCATCTCTGGCCTCATCTACGAAGAGACCCGCGGAGTCCTCAAAGTCTTCCTGGAG 6718803 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || |||| || || | || || |||||||| || || ||||| ||||| || Sbjct 6718804 AATGTGATCCGGGACGCAGTGACTTACACGGAGCACGCCAAGCGCAAGACGGTCACGGCC 6718863 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||||| | || || || ||||||| || ||||| | ||||||| || || Sbjct 6718864 ATGGATGTGGTGTACGCGCTGAAACGCCAGGGCCGCACCCTTTATGGCTTCGG 6718916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79062212269065