Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq798 273 2e-68 seq435 257 2e-63 seq1004 219 4e-52 seq1721 98.7 1e-15 seq1882 93.3 4e-14 seq699 86.0 7e-12 seq11987 84.2 2e-11 seq1195 84.2 2e-11 >seq798 Length=25304 Score = 273 bits (302), Expect = 2e-68 Identities = 537/792 (68%), Gaps = 16/792 (2%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||||||| || |||||||| || | |||| ||| ||| | ||||||| | |||| Sbjct 1758 TTTATTTAGAAGTCAGCATCCAAGGTAAAAAAATTCTCTGTTAAACTTGACATCACTCCC 1699 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || | || || |||||||||| | ||| ||| Sbjct 1698 ATCCTCTGATACTCGCCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTGCTGTGAAATA 1639 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||||||||| | | || | || || |||||||||| | Sbjct 1638 TTCTCCATAAAGTCAAATGGATTTTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AG 1580 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||| ||||| || || | ||| | ||| |||||||| || || Sbjct 1579 CATAAGTCTGTCTGCCACAAACTCAATGTGTTGCTTCCTTAGAGTGCAATTCATCCCAAT 1520 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 || || ||||| | || | || | || | |||||| | || | |||| ||| Sbjct 1519 GAACTTCACAGGCAAGGCCTCAGTGAGGAACTCCTGTTCTATCCAAACAGAATCAATAAT 1460 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | ||| |||| |||| | | ||| || ||||| ||||||| Sbjct 1459 TATTTATCTTACTCTCTCCTCTGATGGTTTGTG----TAC--TAGGTGTTTGAACATCAG 1406 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | ||||||||||||||| | Sbjct 1405 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAG 1346 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 1345 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 1286 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 | ||| || || |||||||| || || | |||||||| || |||| ||||| ||| Sbjct 1285 GACGCCTTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCC 1226 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| ||||| | |||||| | || | |||| || || ||||| || || Sbjct 1225 AATCCAGCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 1166 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | ||| |||| ||||||||| Sbjct 1165 GAAGAGAAATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAATACGGAGACTATACAT 1106 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| Sbjct 1105 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGAT 1046 Query 21835 TTGAACCT-CGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGG 21893 ||||| | | | | |||||| | ||||||||||||||||||| |||||| | | | Sbjct 1045 CTGAACTTACTGGCT-AAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTG 987 Query 21894 CAAAAAATGCCA 21905 |||| || |||| Sbjct 986 CAAAGAAAGCCA 975 >seq435 Length=190850796 Score = 257 bits (284), Expect = 2e-63 Identities = 544/812 (67%), Gaps = 14/812 (2%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 47340719 TTCATTTACAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 47340660 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 47340659 ATCCTCTGATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 47340600 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| ||||||||||| || | | || | || || |||||||||| | Sbjct 47340599 TTCTCCATAAAGTCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AG 47340541 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| ||| ||||||||||| || || |||| ||||| |||||| | || || Sbjct 47340540 CATAAGTCTGTCTGCTACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCTTCCCAAT 47340481 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| | || | || | | | |||||| | || | | ||| Sbjct 47340480 GAGCTTCACAGGCAAGGCCTCAGTGAGGAGCTCCTGTTCTATCCGAATAGCATTGATAAT 47340421 Query 21421 TATATTTATTA-----TCCTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAA 21474 ||| | | ||| |||| |||| | | ||| || ||||| ||||||| Sbjct 47340420 TATTTCTCTTACTCTCTCCTCTGATGGTTTGTG----TAC--TAGCTGTTTGAACATCAG 47340367 Query 21475 ACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAA 21534 || ||||||||||| || ||||| ||||| || || || | ||||||||||||||| | Sbjct 47340366 GCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTAGAAAATGTGAG 47340307 Query 21535 ACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAA 21594 || ||||| | ||||| || || | ||| ||||| || ||||| | || |||||||| Sbjct 47340306 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAA 47340247 Query 21595 AATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAA 21654 ||||| || || |||||||| || || | | |||||| || |||| ||||| ||| Sbjct 47340246 GATGCCTTCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCC 47340187 Query 21655 TATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTT 21714 ||||| | ||| | ||| || | || | |||| || || ||||| || || Sbjct 47340186 AATCCAGGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATT 47340127 Query 21715 TAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACAT 21774 || ||| | |||| | ||| ||||| ||||||||| Sbjct 47340126 GAAGAGAAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACAT 47340067 Query 21775 TTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACA 21834 |||||||||||| ||||| || || || || || || || ||||| | || |||| | Sbjct 47340066 TTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAAT 47340007 Query 21835 TTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGC 21894 ||||| || ||||| | ||||||||||||||||||| |||||||| || || Sbjct 47340006 CTGAACTTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGC 47339947 Query 21895 AAAAAATGCCAATATATTTTTTATAAAATATC 21926 ||| || |||| | || |||||| |||| Sbjct 47339946 AAAGAAAGCCAGAACATGGGATATAAAGTATC 47339915 >seq1004 Length=155834243 Score = 219 bits (242), Expect = 4e-52 Identities = 517/777 (67%), Gaps = 15/777 (2%) Strand=Plus/Minus Query 21134 TCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAA 21193 |||||||| || | ||| ||| ||| | ||||||| | |||||| | |||| Sbjct 136911673 TCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCCATCCTCTGATGC 136911614 Query 21194 TCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAA 21253 || | ||||| || || || || || ||||||||||||| ||| ||| |||||||| Sbjct 136911613 TCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTCCATAAAG 136911554 Query 21254 TCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-TCTATC 21312 ||||||||||| || | | || | || || |||||||||| | ||| ||| || Sbjct 136911553 TCAAATGGATTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC-AGCTTAAGTCTGTC 136911495 Query 21313 TGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGG 21372 ||||||||| || | ||||| ||||| |||||||| || || | || ||||| Sbjct 136911494 TGCTACAAACTCAACGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTTCACAGG 136911435 Query 21373 AAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATAT-TTATTA 21431 | || | || | | | |||||| | || || | |||||| | ||| | Sbjct 136911434 CAAGGCCTCAGTGAGGAGCTCCTGTTCTATCGGAACAGCACTGATAATTATTTCTTACTC 136911375 Query 21432 TC--CTA-GATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCAC 21488 || || |||| | | | | || ||||| ||||||| || |||||||||| Sbjct 136911374 TCTCCTCTGATGGTTTGTG----TCC--TAGGTGTTTGAACATCAGGCAAGCAAAATCAC 136911321 Query 21489 AATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATC 21548 | || ||||| || || || || || | ||||||||||||| | | | ||||| | || Sbjct 136911320 AGTGTAAACCCTCCTCTCTGCTAATAAGTTCATTAGAAAATATGAGGCTAGGCATCAGTC 136911261 Query 21549 CTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGG 21608 ||| || || | ||| ||||| || ||||| | || |||||||| ||||| || || | Sbjct 136911260 CTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTG 136911201 Query 21609 CAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTG 21668 ||||||| || || | |||||||| || |||| ||||| ||| ||||| | Sbjct 136911200 CAGCAAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCAGCGCAAGG 136911141 Query 21669 CCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAtttt 21728 |||| | |||||| | || | |||| || || ||||| || || || ||| | Sbjct 136911140 CCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCC 136911081 Query 21729 tttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATAT 21788 |||| ||| ||||| ||||||||||||||||||||| | Sbjct 136911080 TTTCCCTGGGATCTTTTATG---TAAGTGTCAATGAGACTATACATTTCAGAATGTATGT 136911024 Query 21789 TTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAAT 21848 |||| || || || || || || || ||||| | || |||| ||||| || Sbjct 136911023 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGC 136910964 Query 21849 AAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCA 21905 |||||| | || ||||||||| ||||| ||||| || || ||||| || |||| Sbjct 136910963 TAAATCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAAAGCCA 136910907 >seq1721 Length=108792865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 21500 TCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTT 21559 ||||| || || || | ||||||||||||||| | || ||||| | ||||| || || Sbjct 98462391 TCATCTCTGCTAATAAGTTCATTAGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 98462450 Query 21560 AACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCA 21619 | ||| ||||| || ||||| | || |||||||| ||||| || || |||||||| || Sbjct 98462451 AGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 98462510 Query 21620 ACTAATCGTTCACC 21633 || | |||||||| Sbjct 98462511 ACGACGCGTTCACC 98462524 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || || || || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 98460558 TTCATCTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 98460617 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 98460618 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 98460677 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| ||||||||||| || Sbjct 98460678 TTCTCCATAAAGTCAAATGGATTCTC 98460703 >seq1882 Length=96796970 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 ||||||| || || || | |||||| ||||| || | || ||||| | |||||||||| Sbjct 92365323 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTTT 92365264 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 ||| ||| ||||| | ||||| | |||||| ||||||| || || || ||||| || | Sbjct 92365263 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAACTCCTTCTACAGCAGCGAAGG 92365204 Query 21618 CAACTAATCGTTCACC 21633 | || | || ||| || Sbjct 92365203 CCACCACTCTTTCCCC 92365188 Score = 91.5 bits (100), Expect = 2e-13 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 21110 TTTATAAAAATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCttttttt 21169 |||| || || | | |||||||||| ||||| || | ||| || || ||| ||| | Sbjct 92373970 TTTAAAACAAGAGGTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTGTCTGTGGTTTCT 92373911 Query 21170 GACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCT 21229 | ||||| | | | ||||| || ||||| ||| || || |||||||| |||||| Sbjct 92373910 GCCATAACTGCAAAACGCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCT 92373851 Query 21230 TCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 || || || || ||||||||||||||| |||||||| Sbjct 92373850 TCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 92373813 >seq699 Length=159171411 Score = 86.0 bits (94), Expect = 7e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 || ||| |||||||||||||| ||||| || || || || || || || ||||| | || Sbjct 59756720 ACCATATATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGC 59756661 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | |||||||||||||||||| ||||| Sbjct 59756660 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTACGCCATC 59756601 Query 21886 ACTGGCGGCAAAAAATGCCA 21905 ||| | ||||| || |||| Sbjct 59756600 ACTCACTGCAAAGAAAGCCA 59756581 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/142 (74%), Gaps = 3/142 (2%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||||| ||||| || || || || || || || ||||| || Sbjct 59758628 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGTGGGC 59758569 Query 21826 CTCTGAACATTGAAC--CTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCA 21883 |||| | ||| | | || | |||| | | |||||||||||||||||| ||| Sbjct 59758568 TTCTGTAATCTGACCTTTTTGGGCT-AAATTGCTCCACCAAGTTTTCATTTACTACGCCA 59758510 Query 21884 TCACTGGCGGCAAAAAATGCCA 21905 ||||| || ||||| || |||| Sbjct 59758509 TCACTTGCTGCAAAGAAAGCCA 59758488 >seq11987 Length=11098 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 || ||||||||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 5855 AAAGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 5914 Query 130776 CCCTTTGGGCAAGTAACATATTTA 130799 | |||||||||| | |||| ||| Sbjct 5915 CTTTTTGGGCAAGCAGCATACTTA 5938 >seq1195 Length=124281992 Score = 84.2 bits (92), Expect = 2e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 || ||||||||| ||| ||||||||||| ||||| |||||| |||||||||||||| Sbjct 19682724 AAAGTCCAATTTCTTGTGTCTTCAGAAAAATAAAAACATTTACTCCCAAATCCAATCCAG 19682783 Query 130776 CCCTTTGGGCAAGTAACATATTTA 130799 | |||||||||| | |||| ||| Sbjct 19682784 CTTTTTGGGCAAGCAGCATACTTA 19682807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531806354364200