Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq435 104 6e-17 seq1004 96.9 9e-15 seq798 93.3 1e-13 seq1721 84.2 6e-11 >seq435 Length=190850796 Score = 104 bits (114), Expect = 6e-17 Identities = 326/498 (65%), Gaps = 14/498 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| || ||||||||| | || ||||| | |||| || | | | | ||| Sbjct 47340154 AAGAAGAATGCAGATTGGACCTTGCCCTGGATTGGGGACAAAGAGACTACCTATGGTGAA 47340213 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 47340214 GGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATA 47340273 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 47340274 TTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGC 47340333 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 ||||||||||| | || |||||||| || || | | || || || | | || Sbjct 47340334 AGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT-TC--AAACAGCTAGTACAC 47340390 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC---GT 22728 |||| || | || | ||| || || |||| ||||| || | |||| Sbjct 47340391 AAACCATCAGAGGAGAGAGTAAGAGAAATAATTATCAATGCTATTCGGATAGAACAGGAG 47340450 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAG 22787 || | | | ||||| || || || | |||||||| | ||| | | || ||||| Sbjct 47340451 CTCCTCACT---GAGGCCTTGCCTGTGAAGCTCATTGGGAAGAATTGC-ACTCTAATGAA 47340506 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 || ||| | ||||| ||||| | || | | ||| |||| | ||| || Sbjct 47340507 GCAATGCATTGAGTTTGTAGCAGACAGACTTATGCTGGAACTGGGTTTTAGCAAGGTTTT 47340566 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 | || | ||||||||||| | ||||| ||||||||| ||||||||||| || || Sbjct 47340567 CAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAACTT 47340626 Query 22908 CTTCGAAAAAAGAGTTGG 22925 ||| || || ||||| || Sbjct 47340627 CTTTGAGAAGAGAGTAGG 47340644 >seq1004 Length=155834243 Score = 96.9 bits (106), Expect = 9e-15 Identities = 329/503 (65%), Gaps = 20/503 (4%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||||||||| || ||||| | |||| || | | | | ||| Sbjct 136911122 AAGAAGAAGGCAGATTGGGCCTTGCGCTGGATTGGGGACAAAGAGGCTACCTATGGTGAA 136911181 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || ||||||| || |||||||| ||||||||||| | ||| | || Sbjct 136911182 CGCGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATA 136911241 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| | || | ||||| ||||| | |||||| Sbjct 136911242 TTCTGGCTCAAGAAACGAGGACTGATGCCTAGCCTCATATTTTCTAATGAACTTATTAGC 136911301 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 |||| |||||| | || |||||||| || || | | || || || | || Sbjct 136911302 AGAGAGGAGGGTTTACACTGTGATTTTGCTTGCCTGATGT-TC--AAACACCTAGGACAC 136911358 Query 22672 AAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTTGAAC---GT 22728 |||| || | || | ||| || || |||| | ||| ||| | |||| Sbjct 136911359 AAACCATCAGAGGAGAGAGTA--AGAAATAATTATCAGTGCTGTTCCGATAGAACAGGAG 136911416 Query 22729 CTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATC-AATGAG 22787 || | | | ||||| || || || | |||||||| || ||| | | || ||||| Sbjct 136911417 CTCCTCACT---GAGGCCTTGCCTGTGAAGCTCATTGGGATGAATTGC-ACTCTAATGAA 136911472 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAA--TTTCACTCGGTTATGCAAAGCAT 22845 ||| || | ||||| ||||| | | |||| | ||| |||| | ||| | Sbjct 136911473 GCAATACGTTGAGTTTGTAGCAGACAGAC--TTAAGCTGGAACTGGGTTTTAGCAAGGTT 136911530 Query 22846 TATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAAT 22905 | | || | ||||||||||| | ||||| ||||||||| ||||||||||| || Sbjct 136911531 TTCAGAGTAGAGAATCCATTTGACTTTATGGAGAATATTTCACTGGAAGGAAAGACTAAC 136911590 Query 22906 TTCTTCGAAAAAAGAGTTGGTGA 22928 ||||| || || ||||| || || Sbjct 136911591 TTCTTTGAGAAGAGAGTAGGCGA 136911613 >seq798 Length=25304 Score = 93.3 bits (102), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGAT---GAACAATGAACGTTCATTCGCGGAA 22491 ||||| |||||||| ||||| || ||||| | |||| || | | | | ||| Sbjct 1193 AAGAAGAAGGCAGACTGGGCCTTGTGCTGGATTGGGGACAAAGACGCTACCTATGGTGAA 1252 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 || | | || ||||||| || |||||| | ||||||||||| | ||| | || Sbjct 1253 CGCGTCGTAGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTGCATCCATA 1312 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 || ||||| || ||||| | | | ||||| || || || ||||| ||||| | |||||| Sbjct 1313 TTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGC 1372 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTG 22643 ||||||||||| | || |||||||| || Sbjct 1373 AGAGATGAGGGTTTACACTGTGATTTTGCTTG 1404 >seq1721 Length=108792865 Score = 84.2 bits (92), Expect = 6e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 22501 GCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGCTa 22560 || ||||||| || |||||||| ||||||||||| | ||| | || || ||||| Sbjct 98462509 GCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTC 98462450 Query 22561 aaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATGAG 22620 || ||||| | | | ||||| || || || ||||| ||||| | |||||| |||||||| Sbjct 98462449 AAGAAACGAGGACTGATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGATGAG 98462390 Query 22621 G 22621 | Sbjct 98462389 G 98462389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303116387608310