Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 4e-13 seq9075 86.0 5e-12 seq1441 86.0 5e-12 seq1195 86.0 5e-12 seq699 86.0 5e-12 seq2320 82.4 7e-11 seq1997 82.4 7e-11 >seq1 Length=210400635 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/221 (69%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 34242735 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 34242794 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 34242795 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 34242854 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGT-CAGCGATT 24165 ||| || |||||||| | | ||||||||||| ||||||| |||| | || | Sbjct 34242855 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATG-----GACGTACTTTGACT 34242909 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 | |||||||| || || ||||| ||||| | ||||| ||| Sbjct 34242910 ACAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 34242950 >seq9075 Length=2552 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 2250 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 2309 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 2310 CTCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 2369 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 2370 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 2429 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 2430 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 2469 >seq1441 Length=130397257 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 28400792 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 28400851 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 28400852 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 28400911 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 28400912 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 28400971 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 28400972 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 28401011 >seq1195 Length=124281992 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 101827839 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 101827780 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 101827779 CTCTGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 101827720 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 101827719 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 101827660 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 101827659 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 101827620 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || | || ||| | ||||||||| ||| Sbjct 115889538 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAAGTCGAGCCCAGT 115889479 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || ||||| ||||| || || Sbjct 115889478 GACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCTGACCAG 115889419 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 115889418 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 115889359 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| ||||| || || Sbjct 115889358 ATTCAGAAAGAGTCCAC 115889342 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | ||||| || | || ||| | || |||||| ||| Sbjct 115889310 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 115889251 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | ||||| ||||| ||||| || || || ||||| || || Sbjct 115889250 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGTATCCCTCCTGACCAG 115889191 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | | ||| ||||| || ||||||| | | | | || || ||| Sbjct 115889190 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 115889131 Query 24171 ATTCAAAAAGAATCTACAATTCAT 24194 || || ||||| ||||| ||||| Sbjct 115889130 ATCCAGAAAGAGTCTACCCTTCAT 115889107 >seq699 Length=159171411 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 643000 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 642941 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 642940 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 642881 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 642880 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 642821 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 642820 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 642781 Score = 86.0 bits (94), Expect = 5e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 94894667 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 94894726 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 94894727 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 94894786 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 94894787 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 94894846 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 94894847 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 94894886 >seq2320 Length=142054208 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| | || | Sbjct 106998303 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGCTGAACC 106998362 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || || || | || || ||||| || || ||||| || ||||| || Sbjct 106998363 CTCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 106998422 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 106998423 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTA 106998482 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 106998483 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 106998522 >seq1997 Length=47448759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||||||||| | || || ||||| | || |||||| | || ||| |||| || || | Sbjct 31032552 CAAAATGCAGATTTTCGTGAAAACCCTTACGGGAAAAACCATCACCCTCGAGGTTGAACC 31032611 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | || || | || | || || ||||| || || ||||| || ||||| || Sbjct 31032612 CTCGGATACGAAAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGA 31032671 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| || |||||||| | | ||||||||||| ||||||| | | | || || Sbjct 31032672 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 31032731 Query 24167 TAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 |||||||| || || ||||| ||||| | ||||| ||| Sbjct 31032732 CAACATTCAGAAGGAGTCTACTCTTCATCTTGTGTTGAGA 31032771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429861568001775