Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq435 93.3 3e-14 seq1441 89.7 4e-13 seq1195 89.7 4e-13 seq274 87.8 1e-12 seq1820 84.2 2e-11 seq1556 84.2 2e-11 seq1334 82.4 6e-11 >seq435 Length=190850796 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 151101930 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 151101989 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||||| ||| | || || |||| ||||| || Sbjct 151101990 AGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGG 151102049 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | | ||||| | ||||||| Sbjct 151102050 ATACCCTCCTTGTCTTGAATTTTAGCT--TTGACATTCTCAATGGTGTCACTGGGCTCCA 151102107 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || | || || || || ||||| |||||||| Sbjct 151102108 CCTCAAGGGTGATGGTCTTGGCCGTGAGGGTCTTCACAAAGATCTGCAT 151102156 >seq1441 Length=130397257 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/229 (69%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 24229254 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG-- 24229311 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| ||||||| ||| || || ||||| ||||| || Sbjct 24229312 AGAGTGCGGCCATCCTCCAGCTGTTTGCGGGCAAGTATCAGACGCTGCTGGTCAGGTGGG 24229371 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| |||||| ||| || || | | | ||||| | |||||| Sbjct 24229372 ATACCTTCCTTGTCTTCAATTTTGGCT--TTGACATTCTCAATGGTGTCACTGGGCTCGA 24229429 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||||||||| || | || || || ||||| |||||||| Sbjct 24229430 CCTCAAGGGTGATGGTTTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 24229478 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 119049526 CCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 119049467 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||| | ||| | || || ||||| ||||| || Sbjct 119049466 AGCGTGCGGCCATCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 119049407 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| ||||| ||| || || | | ||||| | |||||| Sbjct 119049406 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACATTCTCAGTGGTGTCACTGGGCTCAA 119049349 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || ||||| |||||||| Sbjct 119049348 CCTCAATGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 119049300 >seq1195 Length=124281992 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| |||||||| || || ||||||||||| | || ||| | || |||| || Sbjct 115889336 TGCAGAGTGGACTCTTTCTGAATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 115889395 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || | || ||| ||||| ||| | |||||| ||||| || || Sbjct 115889396 TTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGGATCTTG 115889455 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | ||||| | |||||| ||| | ||||||||| || |||| Sbjct 115889456 GC--CTTGACGTTCTCGATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGTCTTGCCGG 115889513 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || |||||||| Sbjct 115889514 TCAGGGTCTTCACGAAGATCTGCAT 115889538 >seq274 Length=204313951 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| ||||| || ||||| || || ||||||||||| | | | | | || Sbjct 111212382 CAGGACCAGGTGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAATGCAGCCATC 111212323 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 | || || ||||| ||| | || |||| ||| |||| || | ||| || || || Sbjct 111212322 TTTCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTAGGTGGGGATGCCTTCCTTATC 111212263 Query 16843 GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGT 16902 |||| |||||| | | | ||||| | ||||||| ||||| ||||||||| Sbjct 111212262 CTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGT 111212203 Query 16903 TTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||||||| || || ||||| |||||||| Sbjct 111212202 CTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 111212170 >seq1820 Length=98464013 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || ||||| || | ||| |||| ||||| |||||||| || || ||||| ||||| | Sbjct 87532224 CCACCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTATAGTCTGAG 87532283 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||||| ||| | || || ||||||||||| || Sbjct 87532284 AGTGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGACGCTGTTGGTCAGGTGGG 87532343 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||| ||||| ||||| ||| || || | | ||||| |||||| Sbjct 87532344 ATCCCCTTCTTGTCTTGAATTTTGGCT--TTGACATTCTCAGTGGTGTCATTGGGCTCGA 87532401 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || || || ||||| |||||||| Sbjct 87532402 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 87532450 >seq1556 Length=121768101 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/224 (68%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 16712 CCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATG 16771 ||||| || | ||| |||| ||||| |||||||| || || ||||||||||| | | Sbjct 87863146 CCTCGCAGGCACAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGC 87863205 Query 16772 GTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACG 16831 || | | || |||| |||||||| ||| | || || |||| ||||| || | Sbjct 87863206 GTACGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATA 87863265 Query 16832 CCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCC 16891 ||||| ||||| ||||| | || || | | | || || | |||||| || Sbjct 87863266 CCCTCCTTGTCTTGAATTTTGGGTTTGACATTCTCAATGGTATCACTGGGCTCGACCTCA 87863325 Query 16892 ACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||||||| || || | || || || ||||| |||||||| Sbjct 87863326 AGGGTGATGGTCTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 87863369 >seq1334 Length=132174527 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| || | ||| |||| ||||| |||||||| || || ||||||||||| | Sbjct 4335446 CCACCTCTCAGGCACAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4335387 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | | | | | ||||||| |||||||| ||| | || || | ||| ||||| || Sbjct 4335386 AGACTGTGGCCATCCTCCATCTGTTTGCCGGCAAAGATCAGACACTGCTGGTCAGGTGGG 4335327 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCAC-AGTGTCGCCGGGCTCC 16885 | ||||| ||||| ||||| ||| || || | | ||| ||||| | || ||| Sbjct 4335326 ATACCCTCCTTGTCTTGAATTTTGGCT--TTGACAT-TCTCACTGGTGTCACTGGACTCG 4335270 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| | || || || || || ||||| |||||||| Sbjct 4335269 ACCTCAAGGGTGATGGTCCTGCCCGTGAGTGTCTTCACAAAGATCTGCAT 4335220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405017869772950