Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1195 113 4e-20 seq848 104 2e-17 seq435 102 7e-17 seq1820 100 2e-16 seq2049 98.7 9e-16 seq1441 98.7 9e-16 seq1334 93.3 4e-14 seq545 91.5 1e-13 seq1556 82.4 7e-11 seq1004 82.4 7e-11 >seq1195 Length=124281992 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||||| ||||||| | || || ||| | | Sbjct 115889082 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTTGAGGTCGAGCCCAGT 115889023 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| ||| ||| ||||| ||||| || || |||||||| Sbjct 115889022 GACACCATTGAGAACGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 115888963 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||||| ||||| | ||||||||| Sbjct 115888962 CAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTCTCTGATTACAAT 115888903 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || || || Sbjct 115888902 ATCCAGAAAGAGTCCACTCTGCACTTGGTCCT 115888871 Score = 113 bits (124), Expect = 4e-20 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 24981 TTTGTACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACA 25040 ||||| |||||| || ||||||| || || || ||||| |||| ||||| ||||||| Sbjct 115890010 TTTGT-CAAAACAGA-CAATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACC 115889953 Query 25041 GTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAA 25100 | || || ||| | |||||| || ||| | ||| || ||| ||||| ||| Sbjct 115889952 CTTGAGGTCGAGCCCAGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAA 115889893 Query 25101 GGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGC 25160 || || || |||||||| ||| || | || |||||||| || || | ||||||| ||| Sbjct 115889892 GGCATCCCTCCTGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGC 115889833 Query 25161 ACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || || ||||| || || Sbjct 115889832 ACCCTGTCTGATTACAATATCCAGAAGGAGTCCACTCTGCA 115889792 >seq848 Length=158406734 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| ||||| ||||||| | || || ||| | | Sbjct 109165180 ATGCAGATCTTCGTGAAGACCCTGACTGGTAAGACCATCACCTTTGAGGTCGAGCCCAGT 109165239 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| || || |||||||| Sbjct 109165240 GACACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAG 109165299 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||| || ||||| | ||||||| ||||| | ||||||||| Sbjct 109165300 CAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGGCGCACCCTCTCTGATTACAAT 109165359 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| ||||| || || || || || Sbjct 109165360 ATCCAGAAAGAGTCCACTCTGCACTTGGTCCT 109165391 >seq435 Length=190850796 Score = 102 bits (112), Expect = 7e-17 Identities = 168/238 (71%), Gaps = 7/238 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || | || ||||||| | || |||||| | | Sbjct 151102156 ATGCAGATCTTTGTGAAGACCCTCACGGCCAAGACCATCACCCTTGAGGTGGAGCCCAGT 151102097 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 151102096 GACACCATTGAG--AATGTCAAAGCTAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 151102040 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || |||||||||||||| |||| |||| ||||| | || ||| Sbjct 151102039 CAGCAGCATCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAGACTAC 151101980 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 151101979 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 151101923 >seq1820 Length=98464013 Score = 100 bits (110), Expect = 2e-16 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 87532450 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAAT 87532391 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||| | ||||| ||||||||| Sbjct 87532390 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGAAGGGGATCCCACCTGAC 87532334 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || |||||||||||||| |||| |||| ||||| | || || Sbjct 87532333 CAACAGCGTCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACACTCTCAGACTAT 87532274 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 87532273 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 87532239 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 24997 CAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 ||||||| | ||||| |||||| ||||||| || ||||||| | || || ||| | Sbjct 6886460 CAATGCAGGTCTTTGTGAAGACTCTGACCGGCAAGACCATCACCCTTGAGGTCGAGCCCA 6886401 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||| || ||| | | ||| ||| ||| ||||| ||||| || || ||||||| Sbjct 6886400 GTGACACCATTGAGAAAGTCAAGGCAAATATCCAGGACAAGGAAGGCATCCCTCCTGACC 6886341 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||| || | |||||| | || ||||| | ||||||| Sbjct 6886340 AACAGAGGTTGATTTTTTCTGGGAAACAGCTGGAAGATG 6886302 >seq2049 Length=49578535 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/206 (71%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || |||||| | || || ||| | | Sbjct 13381352 ATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCAGCCTTGAGGTCGAGCCCAGT 13381293 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 |||||||| ||| | || |||| |||| ||| ||||| || ||||| ||||||||| Sbjct 13381292 GACACTATTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGGATCCCACCTGAC 13381236 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||||||||| |||| |||| ||||| | | ||| Sbjct 13381235 CAGCAGGGTCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAAACTAC 13381176 Query 25176 AATATTCAAAAAGAATCCACGCTACA 25201 || || || ||||| ||||| || || Sbjct 13381175 AACATCCAGAAAGAGTCCACCCTGCA 13381150 >seq1441 Length=130397257 Score = 98.7 bits (108), Expect = 9e-16 Identities = 167/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 119049300 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCATTGAGGTTGAGCCCAGT 119049359 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 119049360 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 119049416 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||||| |||||| |||| |||| ||||| | || ||| Sbjct 119049417 CAGCAGCGTCTGATATTTGCCGACAAACAGCTAGAGGATGGCCGCACGCTCTCAGACTAC 119049476 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 119049477 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 119049533 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/238 (70%), Gaps = 9/238 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | | || ||| ||||||| | || || ||| | | Sbjct 24229478 ATGCAGATCTTTGTGAAGACCCTCAGGGGCAAAACCATCACCCTTGAGGTCGAGCCCAGT 24229419 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| || ||| | || |||| |||| | | ||||| ||||| || ||||||||| Sbjct 24229418 GACACCATTGAG--AATGTCAAAGCCAAAATTGAA-GACAAGGAAGGTATCCCACCTGAC 24229362 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | || ||||| ||||||| | || |||| |||||| | || ||| Sbjct 24229361 CAGCAGCGTCTGATACTTGCCCGCAAACAGCTGGAGGATGGCCGCACTCT--CAGACTAC 24229304 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || |||| || |||||| Sbjct 24229303 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGAGGTGG-CATTATT 24229247 >seq1334 Length=132174527 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/238 (70%), Gaps = 7/238 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || | ||||||| | || || ||||| | Sbjct 4335220 ATGCAGATCTTTGTGAAGACACTCACGGGCAGGACCATCACCCTTGAGGTCGAGTCCAGT 4335279 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 4335280 GACACCAGTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 4335336 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||| | | || |||||||||||||| | || |||| | || | | || ||| Sbjct 4335337 CAGCAGTGTCTGATCTTTGCCGGCAAACAGATGGAGGATGGCCACAGTCTCTCAGACTAC 4335396 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || || ||||| ||||| || || | ||||| | || ||||| || |||||| Sbjct 4335397 AACATCCAGAAAGAGTCCACTCTGCACCTGGTGCTGTGCCTGAGAGGTGG-CATTATT 4335453 >seq545 Length=171630274 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | | Sbjct 18158850 ATGCAGATCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 18158791 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| | ||| | || |||| |||| ||| ||||| || || || ||||||||| Sbjct 18158790 GACACCACTGAG--AATGTCAAAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 18158734 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || |||||||||||||| |||| |||| ||||| | | ||| Sbjct 18158733 CAGCAGCATCTGATATTTGCCGGCAAACAGCTAGAGGATGGCCGCACGCTCTCAGGCTAC 18158674 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 18158673 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 18158639 >seq1556 Length=121768101 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/215 (69%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | | || || ||||||| | || || ||| | | Sbjct 87863369 ATGCAGATCTTTGTGAAGACCCTCAGGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 87863310 Query 25059 GACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 || || || ||| | || || | |||| ||| ||||| || || || ||||||||| Sbjct 87863309 GATACCATTGAG--AATGTCAAACCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGAC 87863253 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || |||| | || |||||||||||||| | ||||||| || || | || ||| Sbjct 87863252 CAGCAGCATCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGTACGCTCTCAGACTAC 87863193 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || ||||| ||||| || || | ||||| Sbjct 87863192 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGCT 87863158 >seq1004 Length=155834243 Score = 82.4 bits (90), Expect = 7e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 25077 AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCC 25136 |||| |||| ||| ||||| || || || ||||||||||| ||||| | || |||||| Sbjct 76850208 AAGCCAAAATTCAA-GACAAGGAGGGTATCCCACCTGACCAGCAGCGTCTGATATTTGCC 76850266 Query 25137 GGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACG 25196 |||||||| |||| || ||||| | || ||||| || || ||||| ||||| Sbjct 76850267 AGCAAACAACTAGAGTATAGCCGCACATTCTCAGACTACAAAATCCAGAAAGAGTCCACC 76850326 Query 25197 CTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTATT 25233 || || | ||||| | ||| |||| || |||||| Sbjct 76850327 CTGCACCTGGTGCTGCGCCTACGAGGTGG-CATTATT 76850362 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433252980767075