Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq435 277 2e-69 seq798 230 3e-55 seq1004 228 9e-55 seq699 113 5e-20 seq1721 100 3e-16 seq2320 96.9 4e-15 >seq435 Length=190850796 Score = 277 bits (306), Expect = 2e-69 Identities = 465/669 (70%), Gaps = 3/669 (0%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| ||||||| | || |||||| ||||| | | ||| |||| | ||| ||| Sbjct 47340419 ATTTCTCTTACTCTCTCCTCTGATGGTTTGTGTACTAGCTGTTTGAACATCAGGCAAGCA 47340360 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | |||| ||||| | || || Sbjct 47340359 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGG 47340301 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 47340300 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCC 47340241 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || || | || ||| || | | | || | ||||| Sbjct 47340240 TTCCACTGCAGCAAAGGCTACGACACCTTCACCATAGGTAGTCTCTTTGTCCCCAATCCA 47340181 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || | |||||| || || ||||| | |||||| | ||||| || || || || || Sbjct 47340180 GGGCAAGGTCCAATCTGCATTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 47340121 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | |||| | |||| |||||| || || || | ||| |||||||||||| Sbjct 47340120 AAATTCCCTTTCGTTGGGATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGA 47340061 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || ||||| || Sbjct 47340060 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCAGGCTTCTGTAATCTGAAC 47340001 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||| ||||| ||||||||| || Sbjct 47340000 TTCTTGGCTAAATCACTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAA 47339941 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 ||||| | ||| |||||| | | |||| || || || ||||| | | | Sbjct 47339940 AGCCAGAACATGGGATATAAAGTATCTCTCCTCCGGCTTCAGGGATTCCCAGTGCCAAAT 47339881 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 || || || || || || || | | | ||||| || || || || || || || ||||| Sbjct 47339880 GTCCTTGGACAGGTCCACCTCCT-GGCGGTCCAGAAGGAGGCCTCCGCCTTCTTATACAT 47339822 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAG 93696 | ||| || || || || | || || || |||||||| || ||||| ||| | || Sbjct 47339821 CTGCCAGATATCGTGGTACTCCATGGGGAAAATGACAAAGCGGCACGGGTTTTCTCTCAG 47339762 Query 93697 TAACGGCTC 93705 | ||| || Sbjct 47339761 CAGCGGTTC 47339753 >seq798 Length=25304 Score = 230 bits (254), Expect = 3e-55 Identities = 346/487 (71%), Gaps = 6/487 (1%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||| | ||||||| | || |||||| ||||| | | ||| |||| | ||| ||| Sbjct 1458 ATTTATCTTACTCTCTCCTCTGATGGTTTGTGTACTAGGTGTTTGAACATCAGGCAAGCA 1399 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | |||| ||||| | || || Sbjct 1398 AAATCACAGTGTAAACCCTCATCTC-TGCTAATAAGTTCATTAGAAAATGTGAGGCCAGG 1340 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || | || Sbjct 1339 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGACGCC 1280 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || || | ||||| || | | ||| || | ||||| Sbjct 1279 TTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCGTCTTTGTCCCCAATCCA 1220 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || ||||| || || || ||||| | |||||| | ||||| || || || || || Sbjct 1219 GCACAAGGCCCAGTCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 1160 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA--ATACATTTCA 93394 | || | |||| | |||| ||| || || || || || |||| |||||||||| Sbjct 1159 AAATTCCCTTTCGTTGGGATCTTTTATATAAGTGTCAAT--ACGGAGACTATACATTTCA 1102 Query 93395 GAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGC 93454 ||||| | || ||||| ||||||||||| || |||||||| | ||||| |||||||| Sbjct 1101 GAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGA 1042 Query 93455 ACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaa 93514 |||| || ||||| ||| || | |||||||| ||||| ||||| ||||||| Sbjct 1041 ACTTACTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCATTCACTGCAAAG 982 Query 93515 aaaGCCA 93521 ||||||| Sbjct 981 AAAGCCA 975 >seq1004 Length=155834243 Score = 228 bits (252), Expect = 9e-55 Identities = 361/513 (70%), Gaps = 7/513 (1%) Strand=Plus/Minus Query 93038 ATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCA 93097 |||||| |||||| | || |||||| ||| | | | ||| |||| | ||| ||| Sbjct 136911385 ATTTCT--TACTCTCTCCTCTGATGGTTTGTGTCCTAGGTGTTTGAACATCAGGCAAGCA 136911328 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACT-CATTGCTGAATGTTAAACCTGG 93156 || || |||||||| || |||| || || || | |||| ||| | | | || Sbjct 136911327 AAATCACAGTGTAAACCCTCCTCTC-TGCTAATAAGTTCATTAGAAAATATGAGGCTAGG 136911269 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | ||||||||||||||||||||| ||||| || |||||| ||||||||| || || || Sbjct 136911268 CATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCAGAAAAGAAGATGCC 136911209 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 |||||| || ||||| || || | ||||| || | | || || | ||||| Sbjct 136911208 TTCCACTGCAGCAAAGGCTACGACGCGTTCACCATAGGTAGCCTCTTTGTCCCCAATCCA 136911149 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 || |||||||| || || ||||| | |||||| | ||||| || || || || || Sbjct 136911148 GCGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGAG 136911089 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | || | || | |||| |||||| || || || | || |||||||||||| Sbjct 136911088 AAATTCCCTTTCCCTGGGATCTTTTATGTAAGTGTCAATGA---GACTATACATTTCAGA 136911032 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| |||||||| || Sbjct 136911031 ATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAAC 136910972 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||| |||||| |||||||| || Sbjct 136910971 TTCTTGGCTAAATCGCTCCACCGGGTTTTCATTCACTATGCCATCGCTCGCTGCAAAGAA 136910912 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATC 93549 ||||| | || |||||| | | |||| || Sbjct 136910911 AGCCAGAACGTGGGATATAAAGTATCTCTCCTC 136910879 >seq699 Length=159171411 Score = 113 bits (124), Expect = 5e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 93347 TCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTC 93406 |||| |||||| ||| || | || || | ||| ||| ||||||||||| | || Sbjct 59756755 TCGTTGGAATCTTTTATATAAATGTCAATAAGGAGACCATATATTTCAGAATGTATGTTT 59756696 Query 93407 TCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAA 93466 ||||| ||||||||||| || |||||||| | ||||| || ||||| |||||||| | Sbjct 59756695 TCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTA 59756636 Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 |||| ||| || | |||||||| |||| ||||| ||||||| ||||||| Sbjct 59756635 AATCGCTCCACCAAGTTTTCATTTACTACGCCATCACTCACTGCAAAGAAAGCCA 59756581 Score = 105 bits (116), Expect = 7e-18 Identities = 125/168 (74%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| ||| || || || || | ||| ||||||||||||||| | || ||||| || Sbjct 59758655 ATCTTTTATATAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 59758596 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAG-AAAATCTCT 93473 ||||||||| || |||||||| ||||| || ||||| ||| ||| | |||| || Sbjct 59758595 AATTTGGAAGCCATAGAAACAGTGGGCTTCTGTAATCTGACCTTTTTGGGCTAAATTGCT 59758536 Query 93474 CTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCA 93521 | || | |||||||| |||| ||||| ||||||||| ||||||| Sbjct 59758535 CCACCAAGTTTTCATTTACTACGCCATCACTTGCTGCAAAGAAAGCCA 59758488 >seq1721 Length=108792865 Score = 100 bits (110), Expect = 3e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 98464462 ATCTTTTATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGAATGTTTTCCATGGC 98464521 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| |||||||| |||||||| ||||| ||| Sbjct 98464522 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTGATCTGAACTTCTTGGCTAAATCGCTC 98464581 Query 93475 TAC 93477 || Sbjct 98464582 CAC 98464584 Score = 93.3 bits (102), Expect = 5e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 ||||| | || || | ||||||||||||||||||||| ||||| || |||||| |||| Sbjct 98462418 AATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATGGATGCAAAAGAACCA 98462477 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||||| || || |||||||| || ||||| || || | ||||| Sbjct 98462478 GAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACGCGTTC 98462521 >seq2320 Length=142054208 Score = 96.9 bits (106), Expect = 4e-15 Identities = 252/383 (66%), Gaps = 11/383 (3%) Strand=Plus/Minus Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 || || | ||||||||||||| ||||| | |||||| |||| || | || | ||||| Sbjct 131601542 CATTCATTGTTTCTTGAGCCAGAATATCAATGCAAAAGAACCATAAGAGAAGGTGCCTTC 131601483 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 || ||||| || | | |||||| | | || || | ||||| Sbjct 131601482 TACTATGGCAAAGGCTGCCACACGTTCTCCGTGGGTAGCATCTTTGTTCTCAATCCAACA 131601423 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 || |||||||| || | ||||| | |||||| | |||| || || || || || | Sbjct 131601422 CAAGGCCCAATCTGCCTCCTTCTTGACACAAGGCATCCTTTCAATGGCATTGAAGAGAAA 131601363 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTA---TGTATCGATTAACAGAGAATACATTTCAGA 93396 || | || | | | || | || ||| || | || ||| || ||| ||||| Sbjct 131601362 TTCCCTTTCTT-----TGTTGTCTTTAACATGTGTCAGTAAAGAGATTATCCATGTCAGA 131601308 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || || || ||||| ||||||||||| || ||||| || | ||| || ||| || Sbjct 131601307 ATAGATGTTTTCCATAGCAATTTGGAAGCCATAGAAGCA---GGTTTCTGTAGCCTGAAC 131601251 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| |||| ||| || | ||||||| ||||| ||||| ||||| |||| || Sbjct 131601250 TTCTTGGACAAATTGCTCCACCAAGTTTTCATCAACTATGCCATCACATGCTACAAAGAA 131601191 Query 93517 aGCCAATATATGCTTTATAAAAT 93539 || || ||||| |||||||| Sbjct 131601190 AGTCAGAATATGGGATATAAAAT 131601168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556761922404200