Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq798 174 3e-38 seq435 174 3e-38 seq1004 170 4e-37 seq1721 84.2 4e-11 >seq798 Length=25304 Score = 174 bits (192), Expect = 3e-38 Identities = 461/693 (67%), Gaps = 31/693 (4%) Strand=Plus/Plus Query 42286 TCGAGCACCAGGACATCTGGTC--CATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGC 42343 ||||| |||| || |||| | |||||| |||||||| || |||| ||||||||| Sbjct 839 TCGAGTACCACGATATCTCGCAGACATGTA--AGAAGGCGGAGGCCTCCTTCTGGACCGC 896 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA--CGGCCGGCTGGGAGTCACTGT---CTGAG-AA 42397 ||||||| | |||||| ||| |||| | || |||||| || ||| | ||| || Sbjct 897 CGAGGAGGTGGACCTGTCCA--GACATTCAGCA--CTGGGAATCCCTGAAGCCCGAGGAA 952 Query 42398 CGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAA 42457 || | || | | || | | ||||| ||||| || | ||| |||||||| || Sbjct 953 AGATACTTTATATCCCA----CGTTCTGGCTTTCTTTGCAGTGAATGATGGCATAGTAAA 1008 Query 42458 TGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTA 42517 ||| ||| ||| | || | | | || ||| | || || ||||| ||||| Sbjct 1009 TGAAAACTTGGTGGAGCGATTTAGCCAGTAAGTTCAGATCACAGAAGCCCGCTGTTTCTA 1068 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTA----CGCCAAACTGCTCA 42573 |||||||| || ||||| || ||| | || ||||| |||| | || | || Sbjct 1069 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTATAGTCTCCGTATTG---- 1124 Query 42574 ACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGC 42633 |||| || || |||||| ||| | | || ||||| ||||| || ||||||| Sbjct 1125 ACACTTATATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGC 1184 Query 42634 CCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGT 42693 | || ||||||||||||| |||||||| | |||||| | | ||||| || | Sbjct 1185 CTTGTGTCAAGAAGAAGGCAGACTGGGCCTTGTGCTGGATTGGGGACAAAGACGCTACCT 1244 Query 42694 TCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCG 42753 || || | | ||||||||| | || || || ||| ||||||| || || | || | Sbjct 1245 ATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCGTCTTCTTTTCTGGTTCTTTTG 1304 Query 42754 CCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAA 42812 | ||||| |||||||||||| | ||| | |||||| || ||||| || || || ||| Sbjct 1305 CATCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAA 1363 Query 42813 CTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCAC 42872 || || ||||| || ||||| | || | || ||||| ||||| ||||| | ||| Sbjct 1364 CTTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC---AAACAC 1420 Query 42873 CTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATC 42932 || ||||| || || ||||| | || | || || | || | || ||| Sbjct 1421 CTAGTACACAAACCATCAGAGGAGAGAGTAAGATAAATAATTATTGATTCTGTTTGGATA 1480 Query 42933 GAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG 42965 || ||||||||||||| || | |||| ||| Sbjct 1481 GAACAGGAGTTCCTCACTGAGGCCTTGCCTGTG 1513 >seq435 Length=190850796 Score = 174 bits (192), Expect = 3e-38 Identities = 399/590 (68%), Gaps = 23/590 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 || ||| |||| || |||||| ||||| ||||||||| || |||| |||||||||| Sbjct 47339798 ATGGAGTACCACGATATCTGGCAGATGTATAAGAAGGCGGAGGCCTCCTTCTGGACCGCC 47339857 Query 42345 GAGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 ||||| | |||||| ||||||||| ||| |||||| || ||| | ||| | Sbjct 47339858 -AGGAGGTGGACCTGTCCAAGGACATTTGGCA--CTGGGAATCCCTGAAGCCGGAGGAGA 47339914 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | ||| | | | | ||||| ||||| || || ||| |||||||| |||| Sbjct 47339915 GATACTTTATATCCCATG---TTCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 47339971 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAG--TACTTTGAGGCGCGCTGCTTCTA 42517 | ||| ||| | || | |||| || ||| ||| || || |||| ||||| Sbjct 47339972 AAAACTTGGTGGAGTGATTTAGCCAAGAAGTTCAGATTACA--GAAGCCTGCTGTTTCTA 47340029 Query 42518 CGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 |||||||| || ||||| || ||| | || ||||| |||| | || || | | Sbjct 47340030 TGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGTAT---AGTCTCCTTATTGA 47340086 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 ||| ||||| |||||| ||| | | || ||||| ||||| || |||||||| Sbjct 47340087 CACTTACATAAAAGATCCCAACGAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCC 47340146 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 || |||||||||| || || ||| | | |||||| | | || | || | Sbjct 47340147 TTGTGTCAAGAAGAATGCAGATTGGACCTTGCCCTGGATTGGGGACAAAGAGACTACCTA 47340206 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGC 42754 || || | | ||||||||| | || || || ||||||||||| || || | || || Sbjct 47340207 TGGTGAAGGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGC 47340266 Query 42755 CTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 ||||| |||||||||||| | ||| | |||||| || ||||| || || || |||| Sbjct 47340267 ATCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAAC 47340325 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 | || ||||| || ||||| | || | || ||||| ||||| ||||| Sbjct 47340326 TTATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 47340375 >seq1004 Length=155834243 Score = 170 bits (188), Expect = 4e-37 Identities = 425/643 (66%), Gaps = 47/643 (7%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||||||||||||| ||||| ||||||| | || |||| |||||||||| Sbjct 136910747 ATCAAGTACCAGGACATCTGGCAGATGTATAAGAAGGAGGAGGCCTCCTTCTGGACCGCC 136910806 Query 42345 GAGGAGATTG---------------------ACCTGGCCAAGGACA--CGGCCGGCTGGG 42381 |||||| ||| ||||| ||||||||| |||| ||||| Sbjct 136910807 GAGGAGGTTGTGACCACCGAACCGCAGGTGGACCTGTCCAAGGACATTCGGCA--CTGGG 136910864 Query 42382 AGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAA---ACATACTGGCCTTCTTCGCCG 42438 |||| ||| || ||| || | | | | | || | ||||| ||||| || | Sbjct 136910865 AGTCCCTGA---AGCCCGAGGAGAGATACTTTATATCCCACGTTCTGGCTTTCTTTGCAG 136910921 Query 42439 CCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACT 42498 | || |||||||| ||||| |||| || | || | |||| || ||| | Sbjct 136910922 CGAGCGATGGCATAGTGAATGAAAACCCGGTGGAGCGATTTAGCCAAGAAGTTCAGATCA 136910981 Query 42499 TTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGT 42558 || || ||||| ||||| |||||||| || ||||| || ||| | || ||||| ||| Sbjct 136910982 CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACATTCTGAAATGT 136911041 Query 42559 ACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG----CTGTTC 42614 | | || | |||| ||||| |||||| || | || || || ||| Sbjct 136911042 AT---AGTCTCATTGACACTTACATAAAAGATCCC----AGGGAAAGGGAATTTCTCTTC 136911094 Query 42615 AAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATC 42674 || ||||| || |||||||| || ||||||||||||| || ||||| | |||||| Sbjct 136911095 AATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCGCTGGATT 136911154 Query 42675 GAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATC 42734 | | || || || | || || | | ||||||||| | || || || |||||| Sbjct 136911155 GGGGACAAAGAGGCTACCTATGGTGAACGCGTCGTAGCCTTTGCTGCAGTGGAAGGCATC 136911214 Query 42735 TTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGG 42793 ||||| || || | || || ||||| |||||||||||| | ||| | |||||| | Sbjct 136911215 TTCTTTTCTGGTTCTTTTGCATCCATATTCTGGCTCAAGAAACGAGGACT-GATGCCTAG 136911273 Query 42794 ACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTG 42853 |||| || || || ||||| || ||||| || ||||| | || | || ||||| || Sbjct 136911274 CCTCATATTTTCTAATGAACTTATTAGCAGAGAGGAGGGTTTACACTGTGATTTTGCTTG 136911333 Query 42854 CCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 ||| ||||| | ||||| | ||||| || || ||||| Sbjct 136911334 CCTGATGTTC---AAACACCTAGGACACAAACCATCAGAGGAG 136911373 >seq1721 Length=108792865 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || ||||| |||||| Sbjct 98462512 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCTGGTTCTTTTGCATCCATATTCTGG 98462453 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| || ||||| || Sbjct 98462452 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCTAATGAACTTATTAGCAGAGA 98462394 Query 42827 CGAGG 42831 |||| Sbjct 98462393 TGAGG 98462389 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944171520770800