Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_009334.1 Length=172764 Score E Sequences producing significant alignments: (Bits) Value seq2049 114 1e-20 >seq2049 Length=49578535 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 9861 AGGGCTACCTTGGATGCCAGGCCCTGTCAGAAATGATCCAATTCTACCTGGAGGAAGTCA 9920 |||| ||||| || ||||| ||| |||| || |||||||| || ||||||||||| || | Sbjct 28850654 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 28850595 Query 9921 TGCCACAGGCTGAAAACCAGGACCCTGAAGCCAAAGACCATGTAAATTCTTTGGGTGAAA 9980 |||| || ||||| ||||| ||||| || ||| || || || || ||| |||| |||| Sbjct 28850594 TGCCCCAAGCTGAGAACCATGACCCAGACATCAAGGAGCACGTGAACTCTCTGGGGGAAA 28850535 Query 9981 ATCTAAAGACCCTACGGCTCCGCCTGCG 10008 | || |||||| | |||| | ||||| Sbjct 28850534 AGCTGAAGACCTTCAGGCTGAGGCTGCG 28850507 Score = 100 bits (110), Expect = 3e-16 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 10080 AGCTGCAGGAAAAAGGAATTTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTACA 10139 |||| || || ||||| || ||||||||||||||||| |||||||| || || |||||| Sbjct 28847992 AGCTCCAAGAGAAAGGTATCTACAAAGCCATGAGTGAGTTTGACATCTTCATCGACTACA 28847933 Query 10140 TAGAAGCATACATGACAATTAAAGC 10164 ||||||| ||||||||||| ||||| Sbjct 28847932 TAGAAGCCTACATGACAATGAAAGC 28847908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552618658223200