Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1334 95.1 1e-14 >seq1334 Length=132174527 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || |||||||| | ||||||||| || || ||| ||| ||||| |||||||| |||| Sbjct 4335446 CCACCTCTCAGGCACAGCACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4335387 Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | | ||| || | || |||| || ||||||||||| ||||| | |||||| || || Sbjct 4335386 AGACTGTGGC-CATCCTCCATCTGTTTGCCGGCAAAGATCAGACACTGCTGGTCAGGTGG 4335328 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACAC---TATCAGTAGATTC 34076 | | ||| |||| | | | |||| |||| || | || ||| | ||| | || || Sbjct 4335327 GATACCCTCCTTGT-CTTGAATTTTGGCTT--TGACATTCTCACTGGTGTCACTGGACTC 4335271 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | || | || || || | || || ||||| ||||||||||| ||||| Sbjct 4335270 GACCTCAAGGGTGATGGTCCTGCCCGTGAGTGTCTTCACAAAGATCTGCAT 4335220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396993659192410