Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1441 107 2e-18 seq1195 105 7e-18 seq699 105 7e-18 seq848 100 3e-16 seq545 91.5 2e-13 seq1997 89.7 6e-13 >seq1441 Length=130397257 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| ||| || || || ||||| || | || || || | Sbjct 119049514 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGCGTGCGGCCA 119049455 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || |||||||| || | || ||||| || ||||||||||| | ||| | | ||||||| Sbjct 119049454 TCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 119049395 Query 42114 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 | | ||| |||| | ||||| || | ||||| || | || || || | ||||| Sbjct 119049394 T-CTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAACCTCAATGGTGAT 119049336 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||||||| || ||||| |||||||| ||||| Sbjct 119049335 GGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 119049300 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| ||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 24229266 CGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTG--AGAGTGCGGCCA 24229323 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || | || | ||| || ||||||||||| | ||| | | |||||| Sbjct 24229324 TCCTCCAGCTGTTTGCGGGCAAGTATCAGACGCTGCTGGTCAGGTGGGATACCTTCCTTG 24229383 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 || ||||| ||||| || | | ||||| || | || || || | |||||| Sbjct 24229384 TCTTCAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 24229443 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||| | || ||||| |||||||| ||||| Sbjct 24229444 GTTTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 24229478 >seq1195 Length=124281992 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || |||| ||||| |||| ||| ||| || || ||||||||||||| Sbjct 115888855 ACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGA 115888914 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 115888915 GAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115888974 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| ||| |||| || | | ||||| || | || || Sbjct 115888975 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGAC 115889034 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 115889035 CTCAAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 115889082 Score = 104 bits (114), Expect = 3e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 42006 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 42065 |||| ||| |||||| || ||||||||||||| ||| || ||| | || || |||||| Sbjct 115889792 TGCAGAGTGGACTCCTTCTGGATATTGTAATCAGACAGGGTGCGCCCATCTTCCAGCTGC 115889851 Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 || || || || || | | ||||||||| | || | || ||||||||| ||| || Sbjct 115889852 TTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTG 115889911 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 |||| || | | ||||| || | || || || | |||||||| || || || Sbjct 115889912 GCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTACCAGTC 115889971 Query 42186 AGCGTCTTTACAAAGATTTGCATTTTC 42212 || ||||| || ||||| |||||| || Sbjct 115889972 AGGGTCTTCACGAAGATCTGCATTGTC 115889998 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 86065807 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 86065748 Query 57066 ATACTACCGAGGATT 57080 |||||| |||||||| Sbjct 86065747 ATACTAACGAGGATT 86065733 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 115907697 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 115907756 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 115907757 TACTAACGAGGAGTG 115907771 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 115915853 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 115915912 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 115915913 ATACTAACGAGGA 115915925 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 88585990 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 88585931 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 88585930 ATACTAACGAGGA 88585918 >seq699 Length=159171411 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| |||| |||| || ||| || || |||||||| |||| Sbjct 77802899 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 77802958 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 77802959 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 77803018 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||| ||| ||| || || | | | | ||||| || | ||||| Sbjct 77803019 GATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCAC 77803078 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 77803079 TTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77803126 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||||| |||| |||| || ||| || || |||||||| |||| Sbjct 77803127 ACCGCCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGA 77803186 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 77803187 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 77803246 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || || || || ||| || || | | | | ||||| || | ||||| Sbjct 77803247 GATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCAC 77803306 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 || | |||||||| ||||| || || ||||| || ||||| ||||||| Sbjct 77803307 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTT 77803356 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| |||| ||||| || ||| || || || |||||||||| Sbjct 77802672 CCACCCCTCAGACGCAGGACCAGGTGCAAGGTCGACTCTTTCTGGATGTTGTAATCAGAA 77802731 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||| || || || ||||| | ||||||||||| || Sbjct 77802732 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 77802791 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || || || ||| || || | | | | ||||| || | ||||| Sbjct 77802792 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTAGGCTCCACC 77802851 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 77802852 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 77802898 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 41995 GCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGT 42054 ||| ||||| |||| ||| || || || || ||| | || | ||||| | | | Sbjct 10714314 GCAGCACCAGGTGCAGGGTGGACTGTTTCTGGATGTTGCAGTCTGAGAGAGTGTGGCCAT 10714255 Query 42055 CATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGT 42114 | || ||||| || ||||| || || || ||||||||||| | ||| | || |||||||| Sbjct 10714254 CCTCCAGCTGTTTGCCAGCAAAGATCAGACGCTGCTGGTCAGGTGGGATGCCCTCCTTGT 10714195 Query 42115 CCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 42173 | ||| |||| | ||||| || | ||||| || | ||||| || | ||| || Sbjct 10714194 -CTTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGGTG 10714136 Query 42174 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || ||||| | || ||| | |||||||| | ||| Sbjct 10714135 GTCTTGCCTTTGAGGGTCCTCACAAAGATCTACAT 10714101 >seq848 Length=158406734 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || || |||| ||||| |||| ||| ||| || || ||||||||||||| Sbjct 109165407 ACCCCCGCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATATTGTAATCAGA 109165348 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || ||| | || || ||||| || ||||| || || | | ||||||||| | || Sbjct 109165347 GAGGGTGCGCCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 109165288 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| || |||| || | | ||||| || | || || Sbjct 109165287 GATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 109165228 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| || ||||| ||||| Sbjct 109165227 CTCAAAGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCAT 109165180 >seq545 Length=171630274 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1397665 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1397724 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1397725 ATACTAACGAGGA 1397737 >seq1997 Length=47448759 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15043476 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15043535 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15043536 TACTAACGAGGA 15043547 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15051268 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15051327 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15051328 TACTAACGAGGA 15051339 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15074885 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15074944 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15074945 TACTAACGAGGA 15074956 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15077306 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15077365 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15077366 TACTAACGAGGA 15077377 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 15117301 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15117242 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 15117241 TACTAACGAGGA 15117230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543116345777200