Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1195 93.3 4e-14 seq1441 89.7 5e-13 seq435 86.0 6e-12 seq9075 84.2 2e-11 seq699 84.2 2e-11 seq1 84.2 2e-11 >seq1195 Length=124281992 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | ||| | ||| | | | ||||| || || ||||||||||| Sbjct 115889083 GCCACCTCGGAGACGGAGAACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889142 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 115889143 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889202 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | |||||| | | ||| || Sbjct 115889203 GATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGAC 115889262 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||||||||| || || || || ||||||||| Sbjct 115889263 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATG 115889311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| || || | | Sbjct 101827642 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 101827701 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 101827702 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 101827761 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | ||||| || || || ||||| Sbjct 101827762 TTTTCTATCGTATCAGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 101827821 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 101827822 ACGAAAATCTGCAT 101827835 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | || | ||| | | | ||||| || || ||||||||||| Sbjct 115889539 GCCACCTCGGAGACGGAGGACGAGATGAAGGGTAGACTCTTTCTGGATGTTGTAGTCAGA 115889598 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| || || || || || |||| | |||| | | ||| ||||| ||||| Sbjct 115889599 GAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 115889658 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 115889659 GATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGAC 115889718 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||| | || | || ||||||||||| || || || || ||||||||| Sbjct 115889719 CTCAAGGGTGATGGTCTTACCAGTCAGGGTCTTCACGAAGATCTGCATG 115889767 >seq1441 Length=130397257 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| |||| || | || | | | ||||| || || |||||||||| || Sbjct 24229253 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGT--CT 24229310 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || ||||| || ||||| | || | || |||||||| ||||| || || Sbjct 24229311 GAGAGTGCGGCCATCCTCCAGCTGTTTGCGGGCAAGTATCAGACGCTGCTGGTCAGGTGG 24229370 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 |||||||| ||||| ||||| ||| | | || | |||||| | | ||| || Sbjct 24229371 GATACCTTCCTTGTCTTCAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 24229430 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || | || || || ||||| |||||||| Sbjct 24229431 CTCAAGGGTGATGGTTTTGCCCCTGAGGGTCTTCACAAAGATCTGCAT 24229478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| || || | | Sbjct 28400989 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 28400930 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 28400929 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 28400870 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | ||||| || || || ||||| Sbjct 28400869 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 28400810 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 28400809 ACGAAAATCTGCAT 28400796 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| |||| || | || | | | ||||| || || ||||||||||| Sbjct 119049527 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 119049468 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || ||||| ||| | | || |||||||| ||||| || || Sbjct 119049467 GAGCGTGCGGCCATCCTCTAGCTGTTTGTCGGCAAATATCAGACGCTGCTGGTCAGGTGG 119049408 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || |||||| | | ||| | Sbjct 119049407 GATACCCTCCTTGTC-TTGAATTTTGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCAA 119049349 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || ||||| |||||||| Sbjct 119049348 CCTCAATGGTGATGGTCTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 119049300 >seq435 Length=190850796 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||||| |||| || | || | | | ||||| || || ||||||||||| Sbjct 151101929 GCCACCTCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 151101988 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || ||||| |||| | | || ||| |||| ||||| || || Sbjct 151101989 GAGCGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 151102048 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| |||| | ||| | | || | |||||| | | ||||| Sbjct 151102049 GATACCCTCCTTGTC-TTGAATTTTAGCTTTGACATTCTCAATGGTGTCACTGGGCTCCA 151102107 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || | || || || || ||||| |||||||| Sbjct 151102108 CCTCAAGGGTGATGGTCTTGGCCGTGAGGGTCTTCACAAAGATCTGCAT 151102156 >seq9075 Length=2552 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| || || | | Sbjct 2447 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 2388 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 2387 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 2328 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | ||||| || || || ||||| Sbjct 2327 TTTTCTATTGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 2268 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 2267 ACGAAAATCTGCAT 2254 >seq699 Length=159171411 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| || || | | Sbjct 642803 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 642862 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 642863 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 642922 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | ||||| || || || ||||| Sbjct 642923 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 642982 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 642983 ACGAAAATCTGCAT 642996 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| |||||||||||||| || |||||| || || ||||| || || | | Sbjct 94894864 GACTCCTTCTGAATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCA 94894805 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 94894804 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 94894745 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || | | || ||||||| || | ||||| || || || ||||| Sbjct 94894744 TTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTTCCCGTAAGGGTTTTC 94894685 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 94894684 ACGAAAATCTGCAT 94894671 >seq1 Length=210400635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||||||||||||| || |||||| ||||| ||||| || || | | Sbjct 202614664 GACTCCTTCTGAATGTTGTAGTCGGACAAAGTACGTCCATCCTCCAGTTGCTTGCCAGCA 202614605 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | || || || ||||| || ||||| || || ||| || |||| Sbjct 202614604 AAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 202614545 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | || || || || ||||||| || | || || || || || ||||| Sbjct 202614544 TTTTCTATCGTATCCAACGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 202614485 Query 138601 ACAAAAATCTGCAT 138614 | ||||||||||| Sbjct 202614484 ATGAAAATCTGCAT 202614471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496174282407600