Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq1997 188 1e-42 seq1 105 1e-17 >seq1997 Length=47448759 Score = 188 bits (208), Expect = 1e-42 Identities = 176/224 (79%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| |||||||||||||| || || ||||| || |||||||| || Sbjct 19537735 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCATACT 19537676 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 |||||||| || |||||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 19537675 CTGTTGTGCTCCCTCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 19537616 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 19537615 ACCTCCTGCCCCACCGCAAACCGCAGATGCTCAGGAACTTGAGGAGGGTAGATCATCTCT 19537556 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 19537555 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 19537512 Score = 176 bits (194), Expect = 7e-39 Identities = 212/286 (74%), Gaps = 2/286 (1%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| || ||||| || || ||||| |||||||| | || || || | ||| Sbjct 19539441 AAGGGACAGCCTTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCCGTGTTGATGAT- 19539383 Query 8951 TCT-AAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGAC 9009 ||| ||||| || || || || || ||||| || |||||||| || || || || ||||| Sbjct 19539382 TCTGAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAAGCGGGAGAACATATGAC 19539323 Query 9010 GTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAA 9069 || |||| || ||||||||||| || || || || | || | || |||||||||| Sbjct 19539322 ATTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAACTTCTACCATTGTCTCACCGAA 19539263 Query 9070 GATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGAC 9129 ||||||| | ||||| || ||||| || | | | ||| || || || | ||| |||| Sbjct 19539262 GATGGCATCCGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATAGCATCGAT 19539203 Query 9130 GTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| |||||||| |||| |||||| ||||| || |||||||| ||| Sbjct 19539202 GTCACCATAGAGTGCTTTCAACTCTGCAGCCATTTCCTTCTCTCCT 19539157 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || || ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 19535989 TCACCTTTCACACCCAGGGGAGTCGGGCAGTCATCAGGTACTGGAGGAAGGGCTCTAGTA 19535930 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || |||||| Sbjct 19535929 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAGCATTGTAGGTT 19535870 Query 10507 GGGGGACTGTCAATCA 10522 || ||||| ||||||| Sbjct 19535869 GGTGGACTCTCAATCA 19535854 Score = 116 bits (128), Expect = 5e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| ||| | |||||||| || |||||| ||| ||| | || Sbjct 19536602 TCTTACCCCATGGCCCAGGCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 19536543 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || | |||||||||||| Sbjct 19536542 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGAGCCCTGGGGATC 19536483 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 19536482 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCACTTGAATCAGGAAGCTG 19536423 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 19536422 CTTCTTACCTGA 19536411 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/136 (75%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||| ||| ||| | Sbjct 19534924 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCACACTTATACTG 19534865 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||| | || || || |||| |||||||||||||| Sbjct 19534864 GTCAAATCCCACGCTCATACATACACCTTGGTTTTGACATGGGTAGGAACAGCAAGGGTT 19534805 Query 10960 GGCTGCAATTTAAAAG 10975 ||| ||| |||||| Sbjct 19534804 TGCTACAA--TAAAAG 19534791 >seq1 Length=210400635 Score = 105 bits (116), Expect = 1e-17 Identities = 175/250 (70%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || || |||| || || | || ||||| || ||||| || |||||||| Sbjct 166173966 GTGGCCGTCTTGACAATGTTAAAGCCCATCTCACCGCCAAATGTGCTTGGCTTCCAGTAT 166173907 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 166173906 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 166173847 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | |||| || || Sbjct 166173846 ATCATACTCTCCCCAAAGATAGAGTTCGGATGGCACTTTTCAA-GAAGCAGCCCAGGATA 166173788 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| | | ||||| || || || ||||||||||| Sbjct 166173787 GAACTCCAACGCATCAATGTCTCCATACAACTCCTCCAATTCCGCTGCCATCTCCTTCTC 166173728 Query 9172 ACCTACAAGC 9181 ||||||||| Sbjct 166173727 TCCTACAAGC 166173718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723599493047000