Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Callithrix_20jacchus_20[refseq_20GCF_5F000004665.1_202010-01-22] 14,205 sequences; 2,914,958,544 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq545 86.0 5e-12 >seq545 Length=171630274 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||| ||||| ||| | ||||| | | ||| || | | || | Sbjct 30869150 CCTCATGCTGCACATGGCAGGTGTATCTTTGCTCCTCTCCAGAAGGCACCACCACAGCCG 30869091 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || ||||| ||||| ||||| || ||| | | | Sbjct 30869090 CCCACTTCTGGAAGGTTCCATCCCCTGCTGGCCTGGTCTCCACAAGCTCCATGTCCTGGG 30869031 Query 469 TCAGTTGCTCTGC-TCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527 || | | ||| | ||||| ||||| || | || || |||||||| ||||| || | Sbjct 30869030 TCTGGTCCTCCCCATCCCA-CTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAACCCAGG 30868972 Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAG 558 ||||| ||| | || || | | | |||||| Sbjct 30868971 GCCCAGCATCTCAGGGTGGCCTCATGGTCAG 30868941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397678340637480